miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27935 5' -52.8 NC_005886.2 + 1071 0.66 0.803991
Target:  5'- gGAUGGAugcacAAGCCG-UCGCGgGUGCa-- -3'
miRNA:   3'- -CUGCUU-----UUCGGCaAGUGCgCACGcgu -5'
27935 5' -52.8 NC_005886.2 + 31109 0.66 0.771504
Target:  5'- -uCGGAAgcuugccGGCCGcaaagggUUCAaGCGUGCGCAa -3'
miRNA:   3'- cuGCUUU-------UCGGC-------AAGUgCGCACGCGU- -5'
27935 5' -52.8 NC_005886.2 + 46888 0.66 0.773585
Target:  5'- cGACGAGugcGCCGgcaagCAUGCGUucgacuGCGCu -3'
miRNA:   3'- -CUGCUUuu-CGGCaa---GUGCGCA------CGCGu -5'
27935 5' -52.8 NC_005886.2 + 35599 0.66 0.803991
Target:  5'- cGGCGGGAuaccGGCCcaugcguccaaGUauUCGcCGCGUGCGCu -3'
miRNA:   3'- -CUGCUUU----UCGG-----------CA--AGU-GCGCACGCGu -5'
27935 5' -52.8 NC_005886.2 + 32196 0.66 0.794031
Target:  5'- --aGAaacuGAAGCUGUUCGgGCGU-CGCAg -3'
miRNA:   3'- cugCU----UUUCGGCAAGUgCGCAcGCGU- -5'
27935 5' -52.8 NC_005886.2 + 38190 0.66 0.783892
Target:  5'- uGAUGAAcgucaguugcGCCGU---CGCGUGCGCAu -3'
miRNA:   3'- -CUGCUUuu--------CGGCAaguGCGCACGCGU- -5'
27935 5' -52.8 NC_005886.2 + 10137 0.66 0.794031
Target:  5'- uGCGAAAaaauGGCCGUggUUugGUgauacgGUGCGCGc -3'
miRNA:   3'- cUGCUUU----UCGGCA--AGugCG------CACGCGU- -5'
27935 5' -52.8 NC_005886.2 + 4158 0.66 0.803991
Target:  5'- -uCGuAAAGCCGgcacguggGCGCGUGCGUc -3'
miRNA:   3'- cuGCuUUUCGGCaag-----UGCGCACGCGu -5'
27935 5' -52.8 NC_005886.2 + 29276 0.67 0.70891
Target:  5'- cGAUGA--AGCCGcu-GCGCGUGCGgGu -3'
miRNA:   3'- -CUGCUuuUCGGCaagUGCGCACGCgU- -5'
27935 5' -52.8 NC_005886.2 + 21629 0.67 0.735279
Target:  5'- uAUGAAAAGCCGUUUaauaucgacggggugAUGCccgGUGCGUAu -3'
miRNA:   3'- cUGCUUUUCGGCAAG---------------UGCG---CACGCGU- -5'
27935 5' -52.8 NC_005886.2 + 37033 0.68 0.697776
Target:  5'- cGACGAGuccuGCCG-UCACGCcUGcCGCu -3'
miRNA:   3'- -CUGCUUuu--CGGCaAGUGCGcAC-GCGu -5'
27935 5' -52.8 NC_005886.2 + 24844 0.68 0.652686
Target:  5'- cGCGc-GAGCCGgUCGCGCGggGCGUu -3'
miRNA:   3'- cUGCuuUUCGGCaAGUGCGCa-CGCGu -5'
27935 5' -52.8 NC_005886.2 + 32721 0.69 0.628836
Target:  5'- cGCGAAcgaGAGCCGaaCACgucgcguccuucgGCGUGCGCc -3'
miRNA:   3'- cUGCUU---UUCGGCaaGUG-------------CGCACGCGu -5'
27935 5' -52.8 NC_005886.2 + 25170 0.69 0.595944
Target:  5'- -uCGAu--GCCGUUCACGCGaUGCa-- -3'
miRNA:   3'- cuGCUuuuCGGCAAGUGCGC-ACGcgu -5'
27935 5' -52.8 NC_005886.2 + 9047 0.69 0.618614
Target:  5'- gGGCGAAcAGuuGUUCACGCaaGCGgAa -3'
miRNA:   3'- -CUGCUUuUCggCAAGUGCGcaCGCgU- -5'
27935 5' -52.8 NC_005886.2 + 41364 0.7 0.562206
Target:  5'- uGCGAAcuGCCGuUUCGgGCGUcGCGCc -3'
miRNA:   3'- cUGCUUuuCGGC-AAGUgCGCA-CGCGu -5'
27935 5' -52.8 NC_005886.2 + 41217 0.7 0.562206
Target:  5'- cGACGAAGAaCCGUU-GCGCGaUGCGUc -3'
miRNA:   3'- -CUGCUUUUcGGCAAgUGCGC-ACGCGu -5'
27935 5' -52.8 NC_005886.2 + 35474 0.71 0.496556
Target:  5'- -cUGAGAAGCCGUcgcaccUCACGaauagcuucaGUGCGCGu -3'
miRNA:   3'- cuGCUUUUCGGCA------AGUGCg---------CACGCGU- -5'
27935 5' -52.8 NC_005886.2 + 23116 0.76 0.278934
Target:  5'- cGACGgcGAGCCGUUCACGU--GCGUu -3'
miRNA:   3'- -CUGCuuUUCGGCAAGUGCGcaCGCGu -5'
27935 5' -52.8 NC_005886.2 + 22101 1.09 0.001339
Target:  5'- cGACGAAAAGCCGUUCACGCGUGCGCAa -3'
miRNA:   3'- -CUGCUUUUCGGCAAGUGCGCACGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.