miRNA display CGI

Results 1 - 8 of 8 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
27937	3'	-53.2	NC_005886.2	+	43131	0.66	0.739979
	Target:  5'- aGGUUgcgcgCGUCGACGAAGa-GCGCGCc- -3' miRNA:   3'- gUCAA-----GCAGCUGCUUCgcCGUGUGaa -5'
27937	3'	-53.2	NC_005886.2	+	42544	0.67	0.684664
	Target:  5'- uCGGcgUCGUUGACGAu-CGGCACAUc- -3' miRNA:   3'- -GUCa-AGCAGCUGCUucGCCGUGUGaa -5'
27937	3'	-53.2	NC_005886.2	+	31703	0.68	0.650731
	Target:  5'- gCAGUUCGUCGGC-AGGCGGUccccgugaagAC-CUUg -3' miRNA:   3'- -GUCAAGCAGCUGcUUCGCCG----------UGuGAA- -5'
27937	3'	-53.2	NC_005886.2	+	23309	0.68	0.649596
	Target:  5'- cCGG-UCGUCGACGGuuuguagAGCGGCugGu-- -3' miRNA:   3'- -GUCaAGCAGCUGCU-------UCGCCGugUgaa -5'
27937	3'	-53.2	NC_005886.2	+	46564	0.68	0.627999
	Target:  5'- aAGUUCGUCG-CGugaaauuuaacGAGCGGCAgACc- -3' miRNA:   3'- gUCAAGCAGCuGC-----------UUCGCCGUgUGaa -5'
27937	3'	-53.2	NC_005886.2	+	37382	0.7	0.505322
	Target:  5'- uCGGUgUCGUCGACGcguggcGCGGCGCAa-- -3' miRNA:   3'- -GUCA-AGCAGCUGCuu----CGCCGUGUgaa -5'
27937	3'	-53.2	NC_005886.2	+	19754	0.71	0.463127
	Target:  5'- -cGUUUGUCGAUGAucGGCGGUuCGCUc -3' miRNA:   3'- guCAAGCAGCUGCU--UCGCCGuGUGAa -5'
27937	3'	-53.2	NC_005886.2	+	24242	1.06	0.002042
	Target:  5'- cCAGUUCGUCGACGAAGCGGCACACUUg -3' miRNA:   3'- -GUCAAGCAGCUGCUUCGCCGUGUGAA- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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