miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27937 5' -53.3 NC_005886.2 + 13616 0.66 0.778847
Target:  5'- ---aGUGCGGCGgaUGuCGGCGcguacuucgguACGGCg -3'
miRNA:   3'- caucUAUGCCGCgaAC-GCCGU-----------UGCUG- -5'
27937 5' -53.3 NC_005886.2 + 7142 0.66 0.747184
Target:  5'- --cGGUGCucGCGCUcgGUGGCGGCGGa -3'
miRNA:   3'- cauCUAUGc-CGCGAa-CGCCGUUGCUg -5'
27937 5' -53.3 NC_005886.2 + 38525 0.66 0.736363
Target:  5'- ---aGUGCGGCGCggcCGGCAACa-- -3'
miRNA:   3'- caucUAUGCCGCGaacGCCGUUGcug -5'
27937 5' -53.3 NC_005886.2 + 17775 0.66 0.72543
Target:  5'- aGgcGGUACGGgcgUGCUUGCcGGCAuucucGCGAa -3'
miRNA:   3'- -CauCUAUGCC---GCGAACG-CCGU-----UGCUg -5'
27937 5' -53.3 NC_005886.2 + 41969 0.66 0.72543
Target:  5'- --cGAcaauCGGCGCggggGCGGCGucCGGCg -3'
miRNA:   3'- cauCUau--GCCGCGaa--CGCCGUu-GCUG- -5'
27937 5' -53.3 NC_005886.2 + 43807 0.67 0.715505
Target:  5'- -aAGGUGCGGUGCaaUUGggaaugcagccggcaGGCAugGGCg -3'
miRNA:   3'- caUCUAUGCCGCG--AACg--------------CCGUugCUG- -5'
27937 5' -53.3 NC_005886.2 + 42442 0.67 0.692084
Target:  5'- gGUGGAUGC-GCGg-UGCGGCAACc-- -3'
miRNA:   3'- -CAUCUAUGcCGCgaACGCCGUUGcug -5'
27937 5' -53.3 NC_005886.2 + 36296 0.67 0.692084
Target:  5'- -cGGcgGCGGCaucgGCGGCAucgGCGGCa -3'
miRNA:   3'- caUCuaUGCCGcgaaCGCCGU---UGCUG- -5'
27937 5' -53.3 NC_005886.2 + 38929 0.67 0.680829
Target:  5'- --cGAU-CGGCGCUgcUGCGGgCugcuCGACa -3'
miRNA:   3'- cauCUAuGCCGCGA--ACGCC-Guu--GCUG- -5'
27937 5' -53.3 NC_005886.2 + 18061 0.68 0.645674
Target:  5'- aUGGAUcgugaaAUGGUGCUUGUgcaggacGGCAAgGACa -3'
miRNA:   3'- cAUCUA------UGCCGCGAACG-------CCGUUgCUG- -5'
27937 5' -53.3 NC_005886.2 + 36365 0.68 0.635429
Target:  5'- -cGGcgGCGGCaCggGCGGCGGCaGGCg -3'
miRNA:   3'- caUCuaUGCCGcGaaCGCCGUUG-CUG- -5'
27937 5' -53.3 NC_005886.2 + 35634 0.68 0.624042
Target:  5'- -----cGCGuGCGCUaUGCGGC-GCGGCg -3'
miRNA:   3'- caucuaUGC-CGCGA-ACGCCGuUGCUG- -5'
27937 5' -53.3 NC_005886.2 + 27878 0.68 0.612664
Target:  5'- cGUAGAcaaAUaGCGCauaUGCGGCAGCGAg -3'
miRNA:   3'- -CAUCUa--UGcCGCGa--ACGCCGUUGCUg -5'
27937 5' -53.3 NC_005886.2 + 936 0.69 0.601303
Target:  5'- ----uUACGGCuGCacgUUGCGGCuuCGACa -3'
miRNA:   3'- caucuAUGCCG-CG---AACGCCGuuGCUG- -5'
27937 5' -53.3 NC_005886.2 + 43910 0.69 0.589971
Target:  5'- -aGGAUG-GGCGCaccgGCaGGCAugGGCg -3'
miRNA:   3'- caUCUAUgCCGCGaa--CG-CCGUugCUG- -5'
27937 5' -53.3 NC_005886.2 + 10329 0.69 0.589971
Target:  5'- -----cACGGgGCUUGCGGCAGuuGCa -3'
miRNA:   3'- caucuaUGCCgCGAACGCCGUUgcUG- -5'
27937 5' -53.3 NC_005886.2 + 36197 0.69 0.545112
Target:  5'- -cGGcgGCGGCaCggGCGGCAucgGCGGCg -3'
miRNA:   3'- caUCuaUGCCGcGaaCGCCGU---UGCUG- -5'
27937 5' -53.3 NC_005886.2 + 1724 0.73 0.337154
Target:  5'- ----uUGCGGCGggUGCGGCAGUGGCa -3'
miRNA:   3'- caucuAUGCCGCgaACGCCGUUGCUG- -5'
27937 5' -53.3 NC_005886.2 + 22652 0.74 0.304639
Target:  5'- -gAGAuUGCGGCGaaugcUGCGGCGAUGAUg -3'
miRNA:   3'- caUCU-AUGCCGCga---ACGCCGUUGCUG- -5'
27937 5' -53.3 NC_005886.2 + 36248 0.75 0.267455
Target:  5'- -cGGcgGCGGCaCggGCGGCGGCGGCg -3'
miRNA:   3'- caUCuaUGCCGcGaaCGCCGUUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.