miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27938 3' -53.2 NC_005886.2 + 31472 0.66 0.763349
Target:  5'- cGGacaACGGUAUCugGCGGCGaauCAUGa -3'
miRNA:   3'- cUCg--UGCCAUAGugCGUUGCgc-GUAU- -5'
27938 3' -53.2 NC_005886.2 + 41208 0.66 0.759086
Target:  5'- cAGCACGGgcgacgaagaaccGUUGCGCGAUGCGUc-- -3'
miRNA:   3'- cUCGUGCCa------------UAGUGCGUUGCGCGuau -5'
27938 3' -53.2 NC_005886.2 + 20822 0.66 0.746168
Target:  5'- uGGGCGCGGUugAUgGCGUGGaugugaacgaauaccUGCGCAUGg -3'
miRNA:   3'- -CUCGUGCCA--UAgUGCGUU---------------GCGCGUAU- -5'
27938 3' -53.2 NC_005886.2 + 24522 0.67 0.708661
Target:  5'- -uGCGCGGcGUCACuggcCGGCGCGCu-- -3'
miRNA:   3'- cuCGUGCCaUAGUGc---GUUGCGCGuau -5'
27938 3' -53.2 NC_005886.2 + 40285 0.67 0.686126
Target:  5'- --uCGCGGUcgacaucgagCAUGCGACGCGCAUu -3'
miRNA:   3'- cucGUGCCAua--------GUGCGUUGCGCGUAu -5'
27938 3' -53.2 NC_005886.2 + 33060 0.67 0.674767
Target:  5'- -cGCA-GGUcuuccCGCGCAACGCGCGa- -3'
miRNA:   3'- cuCGUgCCAua---GUGCGUUGCGCGUau -5'
27938 3' -53.2 NC_005886.2 + 35662 0.67 0.674767
Target:  5'- uGGGC-CGGUAUCcCGCcgcuuuACGUGCAg- -3'
miRNA:   3'- -CUCGuGCCAUAGuGCGu-----UGCGCGUau -5'
27938 3' -53.2 NC_005886.2 + 19959 0.67 0.663366
Target:  5'- aGGCguucaACGGcAUCaACGCAGgGCGCAUGc -3'
miRNA:   3'- cUCG-----UGCCaUAG-UGCGUUgCGCGUAU- -5'
27938 3' -53.2 NC_005886.2 + 32186 0.68 0.651932
Target:  5'- aGGUACGcGUAcggcUCGCGCAguGgGCGCGUGa -3'
miRNA:   3'- cUCGUGC-CAU----AGUGCGU--UgCGCGUAU- -5'
27938 3' -53.2 NC_005886.2 + 37401 0.68 0.630164
Target:  5'- cGGGCugcuucaucuacaauCGGUGUCgucgACGCGugGCGCGg- -3'
miRNA:   3'- -CUCGu--------------GCCAUAG----UGCGUugCGCGUau -5'
27938 3' -53.2 NC_005886.2 + 38367 0.68 0.606115
Target:  5'- cGAGCGCGuucucAUCACGCc-CGCGCAc- -3'
miRNA:   3'- -CUCGUGCca---UAGUGCGuuGCGCGUau -5'
27938 3' -53.2 NC_005886.2 + 15808 0.69 0.571967
Target:  5'- cGGCGCGGacggAUCGCGCuccGACGUGUGUu -3'
miRNA:   3'- cUCGUGCCa---UAGUGCG---UUGCGCGUAu -5'
27938 3' -53.2 NC_005886.2 + 45990 0.7 0.494534
Target:  5'- -cGUACGGgaAUguCGCGACGUGCGUAg -3'
miRNA:   3'- cuCGUGCCa-UAguGCGUUGCGCGUAU- -5'
27938 3' -53.2 NC_005886.2 + 14391 0.7 0.483844
Target:  5'- cAGUugGGg--CAcCGCAACGUGCGUGu -3'
miRNA:   3'- cUCGugCCauaGU-GCGUUGCGCGUAU- -5'
27938 3' -53.2 NC_005886.2 + 35505 0.71 0.442254
Target:  5'- cGGGCGCGcaGUAUCGUGCGuCGCGCAUu -3'
miRNA:   3'- -CUCGUGC--CAUAGUGCGUuGCGCGUAu -5'
27938 3' -53.2 NC_005886.2 + 39855 0.73 0.35666
Target:  5'- cGGGCGCGGgucgaaGUCGCGCAAaGCGgGUGa -3'
miRNA:   3'- -CUCGUGCCa-----UAGUGCGUUgCGCgUAU- -5'
27938 3' -53.2 NC_005886.2 + 5591 0.75 0.268818
Target:  5'- ---gACGGUAUCACGCugguUGCGCAUAg -3'
miRNA:   3'- cucgUGCCAUAGUGCGuu--GCGCGUAU- -5'
27938 3' -53.2 NC_005886.2 + 9673 0.78 0.167877
Target:  5'- aGAGUggugcacGCGGUAUCGCGCAAuggcuugguuCGCGCGUGa -3'
miRNA:   3'- -CUCG-------UGCCAUAGUGCGUU----------GCGCGUAU- -5'
27938 3' -53.2 NC_005886.2 + 25781 1.06 0.00172
Target:  5'- uGAGCACGGUAUCACGCAACGCGCAUAc -3'
miRNA:   3'- -CUCGUGCCAUAGUGCGUUGCGCGUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.