miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27939 3' -47 NC_005886.2 + 41362 0.66 0.986563
Target:  5'- cGAAcuGCCGUUUcggGCGUCGCGcc--GGUg -3'
miRNA:   3'- -CUU--UGGCAAAa--CGCGGUGCuuuuCCG- -5'
27939 3' -47 NC_005886.2 + 24295 0.66 0.986187
Target:  5'- -uGAUCGUguggguuccaGcCGCCGCGAAAuucGGGCg -3'
miRNA:   3'- cuUUGGCAaaa-------C-GCGGUGCUUU---UCCG- -5'
27939 3' -47 NC_005886.2 + 43754 0.66 0.984601
Target:  5'- -cGGCCGUgacgcugGCGCaGCGuu-GGGCg -3'
miRNA:   3'- cuUUGGCAaaa----CGCGgUGCuuuUCCG- -5'
27939 3' -47 NC_005886.2 + 44869 0.66 0.982427
Target:  5'- aAGACCGUgUUGCGUugCGCGAAuc-GCu -3'
miRNA:   3'- cUUUGGCAaAACGCG--GUGCUUuucCG- -5'
27939 3' -47 NC_005886.2 + 39247 0.66 0.982427
Target:  5'- ---uCCGUcgauaUGCGCCACGuugccaauGGCg -3'
miRNA:   3'- cuuuGGCAaa---ACGCGGUGCuuuu----CCG- -5'
27939 3' -47 NC_005886.2 + 42689 0.66 0.98003
Target:  5'- --uACCGUgUUGuCGCCguucGCGAAGugcaucacAGGCg -3'
miRNA:   3'- cuuUGGCAaAAC-GCGG----UGCUUU--------UCCG- -5'
27939 3' -47 NC_005886.2 + 7352 0.67 0.977398
Target:  5'- --uACCGUUUcGUGCCuuCGAGAAucguauaaaacGGCa -3'
miRNA:   3'- cuuUGGCAAAaCGCGGu-GCUUUU-----------CCG- -5'
27939 3' -47 NC_005886.2 + 47056 0.67 0.976561
Target:  5'- cAAGCCcgaaaaccGCGCCaaggaagGCGGGAAGGCg -3'
miRNA:   3'- cUUUGGcaaaa---CGCGG-------UGCUUUUCCG- -5'
27939 3' -47 NC_005886.2 + 2017 0.67 0.974519
Target:  5'- -uAACCGgcagGCGUUGCGAGGugccGGCg -3'
miRNA:   3'- cuUUGGCaaaaCGCGGUGCUUUu---CCG- -5'
27939 3' -47 NC_005886.2 + 43361 0.67 0.971383
Target:  5'- --uGCCGUccUGCGUgACGAGc-GGCu -3'
miRNA:   3'- cuuUGGCAaaACGCGgUGCUUuuCCG- -5'
27939 3' -47 NC_005886.2 + 33486 0.67 0.967977
Target:  5'- uGAAACCGU----CGCCACGuuGAcGCa -3'
miRNA:   3'- -CUUUGGCAaaacGCGGUGCuuUUcCG- -5'
27939 3' -47 NC_005886.2 + 44501 0.68 0.95606
Target:  5'- uGAAGCCGUgcaacgUUGagcgGCUGCGAAccGGGCc -3'
miRNA:   3'- -CUUUGGCAa-----AACg---CGGUGCUUu-UCCG- -5'
27939 3' -47 NC_005886.2 + 25715 0.69 0.935935
Target:  5'- --cACCGUgc-GCGCCGCauggGAAcuGGCg -3'
miRNA:   3'- cuuUGGCAaaaCGCGGUG----CUUuuCCG- -5'
27939 3' -47 NC_005886.2 + 24769 0.69 0.930117
Target:  5'- --cGCCGcgUUGCGC-GCGGAcgcGGGGCu -3'
miRNA:   3'- cuuUGGCaaAACGCGgUGCUU---UUCCG- -5'
27939 3' -47 NC_005886.2 + 47239 0.7 0.910748
Target:  5'- -cGACCGUUcgguuuuccgugUUGUGCaGCGAcAAGGCc -3'
miRNA:   3'- cuUUGGCAA------------AACGCGgUGCUuUUCCG- -5'
27939 3' -47 NC_005886.2 + 13319 0.72 0.796264
Target:  5'- cGAuACCGUgacagucgUUGCGCCGcCGAAcAGGa -3'
miRNA:   3'- -CUuUGGCAa-------AACGCGGU-GCUUuUCCg -5'
27939 3' -47 NC_005886.2 + 16936 0.73 0.753147
Target:  5'- cGAGGCCGguuugcaagUUGCGCCGCucGAAGAaGCg -3'
miRNA:   3'- -CUUUGGCaa-------AACGCGGUG--CUUUUcCG- -5'
27939 3' -47 NC_005886.2 + 27306 1.15 0.002647
Target:  5'- aGAAACCGUUUUGCGCCACGAAAAGGCg -3'
miRNA:   3'- -CUUUGGCAAAACGCGGUGCUUUUCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.