miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27939 5' -46.4 NC_005886.2 + 9519 0.66 0.993323
Target:  5'- -----aGCGauUCGGGccacGUCGACGCCg -3'
miRNA:   3'- gauagaCGU--AGCUCuuu-UAGCUGCGG- -5'
27939 5' -46.4 NC_005886.2 + 26180 0.66 0.993323
Target:  5'- ---cCUGUAUCG-GAAGGU-GACGCg -3'
miRNA:   3'- gauaGACGUAGCuCUUUUAgCUGCGg -5'
27939 5' -46.4 NC_005886.2 + 15921 0.66 0.993323
Target:  5'- ---aCUGU-UCGAGAuguUCGAgCGCCu -3'
miRNA:   3'- gauaGACGuAGCUCUuuuAGCU-GCGG- -5'
27939 5' -46.4 NC_005886.2 + 44906 0.66 0.989435
Target:  5'- aUAUCUGCAuacgauUCGuGGu--UCGAUGCg -3'
miRNA:   3'- gAUAGACGU------AGCuCUuuuAGCUGCGg -5'
27939 5' -46.4 NC_005886.2 + 7223 0.67 0.985989
Target:  5'- -cAUCUGCAUUGAcuguuugcGAAAuAUCGugcgaaguACGCCg -3'
miRNA:   3'- gaUAGACGUAGCU--------CUUU-UAGC--------UGCGG- -5'
27939 5' -46.4 NC_005886.2 + 2404 0.67 0.983972
Target:  5'- gUGUC-GCGUcCGGGAcggcAGAUUGAuCGCCa -3'
miRNA:   3'- gAUAGaCGUA-GCUCU----UUUAGCU-GCGG- -5'
27939 5' -46.4 NC_005886.2 + 15746 0.68 0.976594
Target:  5'- aCUG-CUGCAUcCGGGucuucuUCGGCGCg -3'
miRNA:   3'- -GAUaGACGUA-GCUCuuuu--AGCUGCGg -5'
27939 5' -46.4 NC_005886.2 + 28801 0.68 0.970454
Target:  5'- ---aUUGgAUCGAGA----CGACGCCa -3'
miRNA:   3'- gauaGACgUAGCUCUuuuaGCUGCGG- -5'
27939 5' -46.4 NC_005886.2 + 23961 0.69 0.950248
Target:  5'- uUAUCccGC-UCGAauGGAUCGAUGCCg -3'
miRNA:   3'- gAUAGa-CGuAGCUcuUUUAGCUGCGG- -5'
27939 5' -46.4 NC_005886.2 + 40130 0.7 0.934507
Target:  5'- -gAUCUGU-UCGGGGAAGgcuUCGACcuGCCg -3'
miRNA:   3'- gaUAGACGuAGCUCUUUU---AGCUG--CGG- -5'
27939 5' -46.4 NC_005886.2 + 44195 0.7 0.928631
Target:  5'- --uUCUGCGUCGGcacGAGuugCGGCGCa -3'
miRNA:   3'- gauAGACGUAGCU---CUUuuaGCUGCGg -5'
27939 5' -46.4 NC_005886.2 + 40530 0.7 0.922439
Target:  5'- gUAUCUGCGaCGcGAuGAUCGAagggcCGCCg -3'
miRNA:   3'- gAUAGACGUaGCuCUuUUAGCU-----GCGG- -5'
27939 5' -46.4 NC_005886.2 + 7737 0.72 0.861769
Target:  5'- -gGUCUcGCAUCaAGGAAAUCGAacauauUGCCg -3'
miRNA:   3'- gaUAGA-CGUAGcUCUUUUAGCU------GCGG- -5'
27939 5' -46.4 NC_005886.2 + 37119 0.77 0.61223
Target:  5'- ---gCUGCAUCGAGA--AUCaACGCCu -3'
miRNA:   3'- gauaGACGUAGCUCUuuUAGcUGCGG- -5'
27939 5' -46.4 NC_005886.2 + 27266 1.14 0.003831
Target:  5'- gCUAUCUGCAUCGAGAAAAUCGACGCCu -3'
miRNA:   3'- -GAUAGACGUAGCUCUUUUAGCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.