miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2794 3' -53.9 NC_001491.2 + 86170 0.66 0.932983
Target:  5'- cUAGCaGCUcgGGGGC--GCGCUGcgccACGCUGa -3'
miRNA:   3'- -AUUG-CGA--UCCCGauCGCGAU----UGCGAU- -5'
2794 3' -53.9 NC_001491.2 + 43571 0.66 0.921931
Target:  5'- aUGGCGUUGGGGuCUAGUGCcaaaagcGACGUc- -3'
miRNA:   3'- -AUUGCGAUCCC-GAUCGCGa------UUGCGau -5'
2794 3' -53.9 NC_001491.2 + 128320 0.66 0.918412
Target:  5'- -cACGCggguguGGGCUGGCGUUGuccaugguuucaucuACGUUGa -3'
miRNA:   3'- auUGCGau----CCCGAUCGCGAU---------------UGCGAU- -5'
2794 3' -53.9 NC_001491.2 + 26911 0.67 0.882586
Target:  5'- aGGCGC-GGGGCUccaucaAGCGCgcuccAGCGCg- -3'
miRNA:   3'- aUUGCGaUCCCGA------UCGCGa----UUGCGau -5'
2794 3' -53.9 NC_001491.2 + 84704 0.67 0.875155
Target:  5'- --cCGCggauGGGCUAGCuCUAugGCg- -3'
miRNA:   3'- auuGCGau--CCCGAUCGcGAUugCGau -5'
2794 3' -53.9 NC_001491.2 + 57131 0.68 0.843125
Target:  5'- aAACGU---GGCaGGCGCUGACGCa- -3'
miRNA:   3'- aUUGCGaucCCGaUCGCGAUUGCGau -5'
2794 3' -53.9 NC_001491.2 + 77691 0.68 0.834575
Target:  5'- -cGCGCUAacuGGcCUAGCGCUAaugGCGCg- -3'
miRNA:   3'- auUGCGAUc--CC-GAUCGCGAU---UGCGau -5'
2794 3' -53.9 NC_001491.2 + 13932 0.69 0.825825
Target:  5'- aUAGCGCgccGGGGCUGGCgGCcuugGGCGgUGg -3'
miRNA:   3'- -AUUGCGa--UCCCGAUCG-CGa---UUGCgAU- -5'
2794 3' -53.9 NC_001491.2 + 97064 0.69 0.825825
Target:  5'- -cGCGCUAgGGGCUAGgucUGCcAGCGCg- -3'
miRNA:   3'- auUGCGAU-CCCGAUC---GCGaUUGCGau -5'
2794 3' -53.9 NC_001491.2 + 109026 0.69 0.798457
Target:  5'- nAGCcCUAGcGUUAGCGCUAGCGCc- -3'
miRNA:   3'- aUUGcGAUCcCGAUCGCGAUUGCGau -5'
2794 3' -53.9 NC_001491.2 + 12885 0.69 0.798457
Target:  5'- --uCGUUuGGGCUAGCGCUuuCGUa- -3'
miRNA:   3'- auuGCGAuCCCGAUCGCGAuuGCGau -5'
2794 3' -53.9 NC_001491.2 + 112412 0.69 0.788994
Target:  5'- gGGgGCUAGGGCagGGgGCUAGgGCa- -3'
miRNA:   3'- aUUgCGAUCCCGa-UCgCGAUUgCGau -5'
2794 3' -53.9 NC_001491.2 + 112438 0.69 0.788994
Target:  5'- gGGgGCUAGGGCagGGgGCUAGgGCa- -3'
miRNA:   3'- aUUgCGAUCCCGa-UCgCGAUUgCGau -5'
2794 3' -53.9 NC_001491.2 + 112464 0.69 0.788994
Target:  5'- gGGgGCUAGGGCagGGgGCUAGgGCa- -3'
miRNA:   3'- aUUgCGAUCCCGa-UCgCGAUUgCGau -5'
2794 3' -53.9 NC_001491.2 + 112490 0.69 0.788994
Target:  5'- gGGgGCUAGGGCagGGgGCUAGgGCa- -3'
miRNA:   3'- aUUgCGAUCCCGa-UCgCGAUUgCGau -5'
2794 3' -53.9 NC_001491.2 + 112517 0.7 0.729334
Target:  5'- aUAGgGCUAGGGCagGGgGCUAGgGCa- -3'
miRNA:   3'- -AUUgCGAUCCCGa-UCgCGAUUgCGau -5'
2794 3' -53.9 NC_001491.2 + 148280 0.72 0.645032
Target:  5'- gUGGCGCUcccGGGGCcAGCGCacGGCGCa- -3'
miRNA:   3'- -AUUGCGA---UCCCGaUCGCGa-UUGCGau -5'
2794 3' -53.9 NC_001491.2 + 122255 0.77 0.359708
Target:  5'- gGACGCUcacccuuggGGGGUUGGCGCUugcGGCGCUu -3'
miRNA:   3'- aUUGCGA---------UCCCGAUCGCGA---UUGCGAu -5'
2794 3' -53.9 NC_001491.2 + 109051 0.8 0.250451
Target:  5'- uUAGCGCUAGccCUAGCGUUAGCGCUAg -3'
miRNA:   3'- -AUUGCGAUCccGAUCGCGAUUGCGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.