Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2794 | 5' | -51.1 | NC_001491.2 | + | 99207 | 0.66 | 0.986474 |
Target: 5'- --gAGCGUccAGGGUacgGGCGAUGGGGa -3' miRNA: 3'- cgaUUGCGa-UCCCGa--UCGUUACUCCg -5' |
|||||||
2794 | 5' | -51.1 | NC_001491.2 | + | 127474 | 0.66 | 0.9847 |
Target: 5'- gGUUGACGCguugaaagcAGGGgUAGCGcGUGuaGGGCu -3' miRNA: 3'- -CGAUUGCGa--------UCCCgAUCGU-UAC--UCCG- -5' |
|||||||
2794 | 5' | -51.1 | NC_001491.2 | + | 133585 | 0.66 | 0.9847 |
Target: 5'- -gUAGCGCUAGGGgUuugAGUg--GAGGUc -3' miRNA: 3'- cgAUUGCGAUCCCgA---UCGuuaCUCCG- -5' |
|||||||
2794 | 5' | -51.1 | NC_001491.2 | + | 122266 | 0.67 | 0.982753 |
Target: 5'- cGCUuuugguggGACGCUcacccuuggGGGGUUGGCGcuUGcGGCg -3' miRNA: 3'- -CGA--------UUGCGA---------UCCCGAUCGUu-ACuCCG- -5' |
|||||||
2794 | 5' | -51.1 | NC_001491.2 | + | 137503 | 0.67 | 0.982753 |
Target: 5'- aGCUGGuCGaccaggGGGGCgaggGGCuguuGUGGGGUa -3' miRNA: 3'- -CGAUU-GCga----UCCCGa---UCGu---UACUCCG- -5' |
|||||||
2794 | 5' | -51.1 | NC_001491.2 | + | 130511 | 0.67 | 0.982753 |
Target: 5'- aGCUugggguACGC-GGGGaaGGUGAUGGGGUg -3' miRNA: 3'- -CGAu-----UGCGaUCCCgaUCGUUACUCCG- -5' |
|||||||
2794 | 5' | -51.1 | NC_001491.2 | + | 80357 | 0.84 | 0.276625 |
Target: 5'- cGCggguCGCUGGGGCUGGU--UGGGGCa -3' miRNA: 3'- -CGauu-GCGAUCCCGAUCGuuACUCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home