miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2794 5' -51.1 NC_001491.2 + 99207 0.66 0.986474
Target:  5'- --gAGCGUccAGGGUacgGGCGAUGGGGa -3'
miRNA:   3'- cgaUUGCGa-UCCCGa--UCGUUACUCCg -5'
2794 5' -51.1 NC_001491.2 + 127474 0.66 0.9847
Target:  5'- gGUUGACGCguugaaagcAGGGgUAGCGcGUGuaGGGCu -3'
miRNA:   3'- -CGAUUGCGa--------UCCCgAUCGU-UAC--UCCG- -5'
2794 5' -51.1 NC_001491.2 + 133585 0.66 0.9847
Target:  5'- -gUAGCGCUAGGGgUuugAGUg--GAGGUc -3'
miRNA:   3'- cgAUUGCGAUCCCgA---UCGuuaCUCCG- -5'
2794 5' -51.1 NC_001491.2 + 122266 0.67 0.982753
Target:  5'- cGCUuuugguggGACGCUcacccuuggGGGGUUGGCGcuUGcGGCg -3'
miRNA:   3'- -CGA--------UUGCGA---------UCCCGAUCGUu-ACuCCG- -5'
2794 5' -51.1 NC_001491.2 + 137503 0.67 0.982753
Target:  5'- aGCUGGuCGaccaggGGGGCgaggGGCuguuGUGGGGUa -3'
miRNA:   3'- -CGAUU-GCga----UCCCGa---UCGu---UACUCCG- -5'
2794 5' -51.1 NC_001491.2 + 130511 0.67 0.982753
Target:  5'- aGCUugggguACGC-GGGGaaGGUGAUGGGGUg -3'
miRNA:   3'- -CGAu-----UGCGaUCCCgaUCGUUACUCCG- -5'
2794 5' -51.1 NC_001491.2 + 80357 0.84 0.276625
Target:  5'- cGCggguCGCUGGGGCUGGU--UGGGGCa -3'
miRNA:   3'- -CGauu-GCGAUCCCGAUCGuuACUCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.