Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2794 | 5' | -51.1 | NC_001491.2 | + | 80357 | 0.84 | 0.276625 |
Target: 5'- cGCggguCGCUGGGGCUGGU--UGGGGCa -3' miRNA: 3'- -CGauu-GCGAUCCCGAUCGuuACUCCG- -5' |
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2794 | 5' | -51.1 | NC_001491.2 | + | 112474 | 0.77 | 0.602296 |
Target: 5'- gGCUAGgGCagGGGGCUagGGCAG-GGGGCu -3' miRNA: 3'- -CGAUUgCGa-UCCCGA--UCGUUaCUCCG- -5' |
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2794 | 5' | -51.1 | NC_001491.2 | + | 112435 | 0.77 | 0.602296 |
Target: 5'- gGCUAGgGCagGGGGCUagGGCAG-GGGGCu -3' miRNA: 3'- -CGAUUgCGa-UCCCGA--UCGUUaCUCCG- -5' |
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2794 | 5' | -51.1 | NC_001491.2 | + | 112513 | 0.77 | 0.602296 |
Target: 5'- gGCUAGgGCagGGGGCUagGGCAG-GGGGCu -3' miRNA: 3'- -CGAUUgCGa-UCCCGA--UCGUUaCUCCG- -5' |
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2794 | 5' | -51.1 | NC_001491.2 | + | 13939 | 0.75 | 0.665305 |
Target: 5'- cGCUGguauagcGCGCcGGGGCUGGCGGccuUG-GGCg -3' miRNA: 3'- -CGAU-------UGCGaUCCCGAUCGUU---ACuCCG- -5' |
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2794 | 5' | -51.1 | NC_001491.2 | + | 57403 | 0.7 | 0.906008 |
Target: 5'- aGCUAgcuugaucaugcacuACGCUggugGGGGCUgAGCA--GGGGCu -3' miRNA: 3'- -CGAU---------------UGCGA----UCCCGA-UCGUuaCUCCG- -5' |
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2794 | 5' | -51.1 | NC_001491.2 | + | 32249 | 0.7 | 0.916014 |
Target: 5'- cGCUGuUGCUGGGGgUGuGCAA-GAGGg -3' miRNA: 3'- -CGAUuGCGAUCCCgAU-CGUUaCUCCg -5' |
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2794 | 5' | -51.1 | NC_001491.2 | + | 122209 | 0.7 | 0.921931 |
Target: 5'- cGCUAGCGCggguugUAGGGUggUGGUuguuggugGGGGCa -3' miRNA: 3'- -CGAUUGCG------AUCCCG--AUCGuua-----CUCCG- -5' |
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2794 | 5' | -51.1 | NC_001491.2 | + | 39786 | 0.69 | 0.932983 |
Target: 5'- aCUccCGCUAGGGCg---GAUGAGGUg -3' miRNA: 3'- cGAuuGCGAUCCCGaucgUUACUCCG- -5' |
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2794 | 5' | -51.1 | NC_001491.2 | + | 147015 | 0.69 | 0.947612 |
Target: 5'- gGCgagGACGaugAGGGCUgcugggaccgAGuCGGUGGGGCc -3' miRNA: 3'- -CGa--UUGCga-UCCCGA----------UC-GUUACUCCG- -5' |
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2794 | 5' | -51.1 | NC_001491.2 | + | 66506 | 0.69 | 0.947612 |
Target: 5'- uGgUGGCGCgacgacggagAGaGGCUGGCAuagaGGGGCa -3' miRNA: 3'- -CgAUUGCGa---------UC-CCGAUCGUua--CUCCG- -5' |
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2794 | 5' | -51.1 | NC_001491.2 | + | 82662 | 0.69 | 0.951976 |
Target: 5'- cGCUccGCGCU-GGGCcugGGCGuuUGGGGUg -3' miRNA: 3'- -CGAu-UGCGAuCCCGa--UCGUu-ACUCCG- -5' |
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2794 | 5' | -51.1 | NC_001491.2 | + | 31013 | 0.68 | 0.965979 |
Target: 5'- aGCUGuGCGCccUGGGGCU-GCAgucugcguuaaaguAUGAGGa -3' miRNA: 3'- -CGAU-UGCG--AUCCCGAuCGU--------------UACUCCg -5' |
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2794 | 5' | -51.1 | NC_001491.2 | + | 14130 | 0.68 | 0.966971 |
Target: 5'- gGCUauaGugGCUGGGaGUgGGCAGgcuaucGAGGCc -3' miRNA: 3'- -CGA---UugCGAUCC-CGaUCGUUa-----CUCCG- -5' |
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2794 | 5' | -51.1 | NC_001491.2 | + | 86841 | 0.67 | 0.97307 |
Target: 5'- cUUAACGCgGGGaucGCU-GCGuAUGAGGCg -3' miRNA: 3'- cGAUUGCGaUCC---CGAuCGU-UACUCCG- -5' |
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2794 | 5' | -51.1 | NC_001491.2 | + | 137503 | 0.67 | 0.982753 |
Target: 5'- aGCUGGuCGaccaggGGGGCgaggGGCuguuGUGGGGUa -3' miRNA: 3'- -CGAUU-GCga----UCCCGa---UCGu---UACUCCG- -5' |
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2794 | 5' | -51.1 | NC_001491.2 | + | 130511 | 0.67 | 0.982753 |
Target: 5'- aGCUugggguACGC-GGGGaaGGUGAUGGGGUg -3' miRNA: 3'- -CGAu-----UGCGaUCCCgaUCGUUACUCCG- -5' |
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2794 | 5' | -51.1 | NC_001491.2 | + | 122266 | 0.67 | 0.982753 |
Target: 5'- cGCUuuugguggGACGCUcacccuuggGGGGUUGGCGcuUGcGGCg -3' miRNA: 3'- -CGA--------UUGCGA---------UCCCGAUCGUu-ACuCCG- -5' |
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2794 | 5' | -51.1 | NC_001491.2 | + | 133585 | 0.66 | 0.9847 |
Target: 5'- -gUAGCGCUAGGGgUuugAGUg--GAGGUc -3' miRNA: 3'- cgAUUGCGAUCCCgA---UCGuuaCUCCG- -5' |
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2794 | 5' | -51.1 | NC_001491.2 | + | 127474 | 0.66 | 0.9847 |
Target: 5'- gGUUGACGCguugaaagcAGGGgUAGCGcGUGuaGGGCu -3' miRNA: 3'- -CGAUUGCGa--------UCCCgAUCGU-UAC--UCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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