miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2794 5' -51.1 NC_001491.2 + 32249 0.7 0.916014
Target:  5'- cGCUGuUGCUGGGGgUGuGCAA-GAGGg -3'
miRNA:   3'- -CGAUuGCGAUCCCgAU-CGUUaCUCCg -5'
2794 5' -51.1 NC_001491.2 + 57403 0.7 0.906008
Target:  5'- aGCUAgcuugaucaugcacuACGCUggugGGGGCUgAGCA--GGGGCu -3'
miRNA:   3'- -CGAU---------------UGCGA----UCCCGA-UCGUuaCUCCG- -5'
2794 5' -51.1 NC_001491.2 + 13939 0.75 0.665305
Target:  5'- cGCUGguauagcGCGCcGGGGCUGGCGGccuUG-GGCg -3'
miRNA:   3'- -CGAU-------UGCGaUCCCGAUCGUU---ACuCCG- -5'
2794 5' -51.1 NC_001491.2 + 112435 0.77 0.602296
Target:  5'- gGCUAGgGCagGGGGCUagGGCAG-GGGGCu -3'
miRNA:   3'- -CGAUUgCGa-UCCCGA--UCGUUaCUCCG- -5'
2794 5' -51.1 NC_001491.2 + 112474 0.77 0.602296
Target:  5'- gGCUAGgGCagGGGGCUagGGCAG-GGGGCu -3'
miRNA:   3'- -CGAUUgCGa-UCCCGA--UCGUUaCUCCG- -5'
2794 5' -51.1 NC_001491.2 + 112513 0.77 0.602296
Target:  5'- gGCUAGgGCagGGGGCUagGGCAG-GGGGCu -3'
miRNA:   3'- -CGAUUgCGa-UCCCGA--UCGUUaCUCCG- -5'
2794 5' -51.1 NC_001491.2 + 80357 0.84 0.276625
Target:  5'- cGCggguCGCUGGGGCUGGU--UGGGGCa -3'
miRNA:   3'- -CGauu-GCGAUCCCGAUCGuuACUCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.