Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27941 | 3' | -54.1 | NC_005886.2 | + | 40029 | 0.66 | 0.700754 |
Target: 5'- gGGCCAugcugaugccggcGAUGUUCGGCaGGU-CGAAg- -3' miRNA: 3'- -CCGGU-------------CUACGAGCCGcCCAaGUUUgu -5' |
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27941 | 3' | -54.1 | NC_005886.2 | + | 46725 | 0.66 | 0.712851 |
Target: 5'- uGCCAuGGUGCaucacaugCGGCGGGcuggUgGAACAc -3' miRNA: 3'- cCGGU-CUACGa-------GCCGCCCa---AgUUUGU- -5' |
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27941 | 3' | -54.1 | NC_005886.2 | + | 29629 | 1.12 | 0.000696 |
Target: 5'- cGGCCAGAUGCUCGGCGGGUUCAAACAa -3' miRNA: 3'- -CCGGUCUACGAGCCGCCCAAGUUUGU- -5' |
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27941 | 3' | -54.1 | NC_005886.2 | + | 21086 | 0.8 | 0.115005 |
Target: 5'- cGGCCccuaAGAUGCUCGGCacugugccuaccGGGUUCAAuaGCAc -3' miRNA: 3'- -CCGG----UCUACGAGCCG------------CCCAAGUU--UGU- -5' |
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27941 | 3' | -54.1 | NC_005886.2 | + | 31112 | 0.73 | 0.339698 |
Target: 5'- aGGUCGGAagcuUGC-CGGCcgcaaaGGGUUCAAGCGu -3' miRNA: 3'- -CCGGUCU----ACGaGCCG------CCCAAGUUUGU- -5' |
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27941 | 3' | -54.1 | NC_005886.2 | + | 39733 | 0.69 | 0.567648 |
Target: 5'- cGCCuGAUGCgcgUGGCGGag-CAAACGa -3' miRNA: 3'- cCGGuCUACGa--GCCGCCcaaGUUUGU- -5' |
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27941 | 3' | -54.1 | NC_005886.2 | + | 30550 | 0.66 | 0.712851 |
Target: 5'- -aCCAGAUGUacCGGUGGGUUU--GCGg -3' miRNA: 3'- ccGGUCUACGa-GCCGCCCAAGuuUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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