miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27941 5' -51.5 NC_005886.2 + 47281 0.66 0.883724
Target:  5'- aGCgUCA--ACCCGGugGuGAUGCCg -3'
miRNA:   3'- aCGaAGUuuUGGGCCugCcUUGUGGg -5'
27941 5' -51.5 NC_005886.2 + 20310 0.66 0.867728
Target:  5'- gGgaUCAAGcAUUCGGACGGAuuGCCa -3'
miRNA:   3'- aCgaAGUUU-UGGGCCUGCCUugUGGg -5'
27941 5' -51.5 NC_005886.2 + 35913 0.66 0.850688
Target:  5'- aUGCaccggUCAAAGC--GGAUGGGAUAUCCg -3'
miRNA:   3'- -ACGa----AGUUUUGggCCUGCCUUGUGGG- -5'
27941 5' -51.5 NC_005886.2 + 28952 0.67 0.841798
Target:  5'- aUGCUUC---GCCCGGuucaACuGAGCgaACCCa -3'
miRNA:   3'- -ACGAAGuuuUGGGCC----UGcCUUG--UGGG- -5'
27941 5' -51.5 NC_005886.2 + 13926 0.67 0.841798
Target:  5'- gGCUUUu--GCgCGuGACGGAACugCg -3'
miRNA:   3'- aCGAAGuuuUGgGC-CUGCCUUGugGg -5'
27941 5' -51.5 NC_005886.2 + 18381 0.67 0.832673
Target:  5'- aGCUUCG----CCGGACGcGAcgACGCCg -3'
miRNA:   3'- aCGAAGUuuugGGCCUGC-CU--UGUGGg -5'
27941 5' -51.5 NC_005886.2 + 24314 0.67 0.832673
Target:  5'- cGCcgCGAAAUUCGGGCGGAAgAUg- -3'
miRNA:   3'- aCGaaGUUUUGGGCCUGCCUUgUGgg -5'
27941 5' -51.5 NC_005886.2 + 38562 0.67 0.823323
Target:  5'- --gUUCAgcGAGCgcgaCGGACGGGAUACCg -3'
miRNA:   3'- acgAAGU--UUUGg---GCCUGCCUUGUGGg -5'
27941 5' -51.5 NC_005886.2 + 44058 0.68 0.752515
Target:  5'- gGCUgu---ACCCGGcauaccguGCGGAACgGCCCc -3'
miRNA:   3'- aCGAaguuuUGGGCC--------UGCCUUG-UGGG- -5'
27941 5' -51.5 NC_005886.2 + 45881 0.69 0.741778
Target:  5'- gGCUUCuucgcuGAACCCGG-CGuuucGACACCa -3'
miRNA:   3'- aCGAAGu-----UUUGGGCCuGCc---UUGUGGg -5'
27941 5' -51.5 NC_005886.2 + 17468 0.69 0.741778
Target:  5'- cUGCgUCGAAccGCCCGG-CaGugcuGCACCCg -3'
miRNA:   3'- -ACGaAGUUU--UGGGCCuGcCu---UGUGGG- -5'
27941 5' -51.5 NC_005886.2 + 31225 0.7 0.675319
Target:  5'- cGCUUgGAguuuGACCCGGACGcGuucgucACGCCg -3'
miRNA:   3'- aCGAAgUU----UUGGGCCUGC-Cu-----UGUGGg -5'
27941 5' -51.5 NC_005886.2 + 35149 0.7 0.664018
Target:  5'- aUGCguggUAcAACCCGGcuGCGGGGCGCgCa -3'
miRNA:   3'- -ACGaa--GUuUUGGGCC--UGCCUUGUGgG- -5'
27941 5' -51.5 NC_005886.2 + 24192 0.7 0.664018
Target:  5'- cUGgaUCGAGACCCGGcCaccACGCCCg -3'
miRNA:   3'- -ACgaAGUUUUGGGCCuGccuUGUGGG- -5'
27941 5' -51.5 NC_005886.2 + 38989 0.71 0.618614
Target:  5'- uUGCUUCGGauGAUCCGuGCGG-GCACCa -3'
miRNA:   3'- -ACGAAGUU--UUGGGCcUGCCuUGUGGg -5'
27941 5' -51.5 NC_005886.2 + 15195 0.71 0.607267
Target:  5'- aGCacagCGAAauAUCCGGACGGcACGCCa -3'
miRNA:   3'- aCGaa--GUUU--UGGGCCUGCCuUGUGGg -5'
27941 5' -51.5 NC_005886.2 + 39653 0.72 0.551069
Target:  5'- gGCgaaaUCAAAcAUuuGGACGGGcCGCCCg -3'
miRNA:   3'- aCGa---AGUUU-UGggCCUGCCUuGUGGG- -5'
27941 5' -51.5 NC_005886.2 + 991 0.73 0.475429
Target:  5'- cGUUUCu-GACCCGcGACGGcuuguGCAUCCa -3'
miRNA:   3'- aCGAAGuuUUGGGC-CUGCCu----UGUGGG- -5'
27941 5' -51.5 NC_005886.2 + 43053 0.83 0.132416
Target:  5'- cGCUUCAAuACCCgguuuccagaucGGACGcGAACGCCCc -3'
miRNA:   3'- aCGAAGUUuUGGG------------CCUGC-CUUGUGGG- -5'
27941 5' -51.5 NC_005886.2 + 29595 1.14 0.001046
Target:  5'- gUGCUUCAAAACCCGGACGGAACACCCg -3'
miRNA:   3'- -ACGAAGUUUUGGGCCUGCCUUGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.