miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27943 3' -51.6 NC_005886.2 + 33812 1.06 0.00283
Target:  5'- cAUCGUAACACCCACGCACACAUACCGc -3'
miRNA:   3'- -UAGCAUUGUGGGUGCGUGUGUAUGGC- -5'
27943 3' -51.6 NC_005886.2 + 16979 0.76 0.330833
Target:  5'- uGUCGUgGACGCCgACGUuugagACGCGUACCGu -3'
miRNA:   3'- -UAGCA-UUGUGGgUGCG-----UGUGUAUGGC- -5'
27943 3' -51.6 NC_005886.2 + 4079 0.75 0.35666
Target:  5'- --aGUGACGCaCGCGCcCACGUGCCGg -3'
miRNA:   3'- uagCAUUGUGgGUGCGuGUGUAUGGC- -5'
27943 3' -51.6 NC_005886.2 + 22572 0.71 0.549452
Target:  5'- -aCGgcaAGCGCaCCACGCACACGgguUGCUGg -3'
miRNA:   3'- uaGCa--UUGUG-GGUGCGUGUGU---AUGGC- -5'
27943 3' -51.6 NC_005886.2 + 35457 0.71 0.583309
Target:  5'- -cCGUuGCACCCgGCGCGCugAgaaGCCGu -3'
miRNA:   3'- uaGCAuUGUGGG-UGCGUGugUa--UGGC- -5'
27943 3' -51.6 NC_005886.2 + 1439 0.7 0.640479
Target:  5'- cAUCGUGAaccacaaGCCCGC-CACGCAcGCCa -3'
miRNA:   3'- -UAGCAUUg------UGGGUGcGUGUGUaUGGc -5'
27943 3' -51.6 NC_005886.2 + 24506 0.69 0.662223
Target:  5'- -cCGgcGCGCUCGCGCuGCACAacacggguuuuguUGCCGg -3'
miRNA:   3'- uaGCauUGUGGGUGCG-UGUGU-------------AUGGC- -5'
27943 3' -51.6 NC_005886.2 + 22336 0.68 0.719813
Target:  5'- -cCGUGACACUCGCGC-CGCA-AUCa -3'
miRNA:   3'- uaGCAUUGUGGGUGCGuGUGUaUGGc -5'
27943 3' -51.6 NC_005886.2 + 1070 0.68 0.72977
Target:  5'- -gCGUcACGCCCAUGCAggccgucCACuUACCGc -3'
miRNA:   3'- uaGCAuUGUGGGUGCGU-------GUGuAUGGC- -5'
27943 3' -51.6 NC_005886.2 + 25690 0.68 0.73087
Target:  5'- -gCGUGGCACaaugCACGCuguCACAUcaACCGa -3'
miRNA:   3'- uaGCAUUGUGg---GUGCGu--GUGUA--UGGC- -5'
27943 3' -51.6 NC_005886.2 + 21213 0.68 0.741821
Target:  5'- uUCGcgAGCACCUGCGC-CGCGUcgACCu -3'
miRNA:   3'- uAGCa-UUGUGGGUGCGuGUGUA--UGGc -5'
27943 3' -51.6 NC_005886.2 + 37231 0.68 0.741821
Target:  5'- --aGUAACACUgAUgGCACACGUACgGa -3'
miRNA:   3'- uagCAUUGUGGgUG-CGUGUGUAUGgC- -5'
27943 3' -51.6 NC_005886.2 + 20981 0.68 0.746168
Target:  5'- uUCGUAGuCACCCGUGCuauugaacccgguagGCACAgUGCCGa -3'
miRNA:   3'- uAGCAUU-GUGGGUGCG---------------UGUGU-AUGGC- -5'
27943 3' -51.6 NC_005886.2 + 38711 0.68 0.7739
Target:  5'- -aCGU--CGCCCGCGC-CGCAucUACCa -3'
miRNA:   3'- uaGCAuuGUGGGUGCGuGUGU--AUGGc -5'
27943 3' -51.6 NC_005886.2 + 45217 0.68 0.7739
Target:  5'- cGUCGUcGAUGCCguCGCGCugAUACUu -3'
miRNA:   3'- -UAGCA-UUGUGGguGCGUGugUAUGGc -5'
27943 3' -51.6 NC_005886.2 + 28692 0.68 0.7739
Target:  5'- uAUUGUGAUGCCCGCuGaUACGCGUcgcACCGu -3'
miRNA:   3'- -UAGCAUUGUGGGUG-C-GUGUGUA---UGGC- -5'
27943 3' -51.6 NC_005886.2 + 16106 0.67 0.784292
Target:  5'- -gCGUGACcCCCaagguaACGCGCACAU-CCu -3'
miRNA:   3'- uaGCAUUGuGGG------UGCGUGUGUAuGGc -5'
27943 3' -51.6 NC_005886.2 + 29843 0.67 0.784292
Target:  5'- cGUCGUuuu-CCCAUGCGCGCAUcGCUu -3'
miRNA:   3'- -UAGCAuuguGGGUGCGUGUGUA-UGGc -5'
27943 3' -51.6 NC_005886.2 + 20745 0.67 0.794513
Target:  5'- uUCGUucACAUCCACGC-CAUcaACCGc -3'
miRNA:   3'- uAGCAu-UGUGGGUGCGuGUGuaUGGC- -5'
27943 3' -51.6 NC_005886.2 + 35323 0.67 0.794513
Target:  5'- cGUCGUGcucGCGCCaguuCGCugACAUGCa- -3'
miRNA:   3'- -UAGCAU---UGUGGgu--GCGugUGUAUGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.