Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27944 | 3' | -50.7 | NC_005886.2 | + | 1235 | 0.72 | 0.561557 |
Target: 5'- gGCGGCGgGgGCUUCGGcccucacUAUc-GCGACg -3' miRNA: 3'- -CGCCGCgCgCGAAGCU-------AUAaaUGCUG- -5' |
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27944 | 3' | -50.7 | NC_005886.2 | + | 1518 | 0.73 | 0.518211 |
Target: 5'- cGUGGCGUGCGUggCGGgcuuguggUUACGAUg -3' miRNA: 3'- -CGCCGCGCGCGaaGCUaua-----AAUGCUG- -5' |
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27944 | 3' | -50.7 | NC_005886.2 | + | 7143 | 0.68 | 0.834922 |
Target: 5'- cCGGUGCucGCGC-UCGGUG---GCGGCg -3' miRNA: 3'- cGCCGCG--CGCGaAGCUAUaaaUGCUG- -5' |
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27944 | 3' | -50.7 | NC_005886.2 | + | 11556 | 0.66 | 0.90082 |
Target: 5'- uGCGG-GCGUagucaccaaGCUUCGggAUUgcCGACa -3' miRNA: 3'- -CGCCgCGCG---------CGAAGCuaUAAauGCUG- -5' |
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27944 | 3' | -50.7 | NC_005886.2 | + | 13475 | 0.68 | 0.834922 |
Target: 5'- cCGGCGCGUuuuCUUCGAgaUAaacccgaaguucUUUACGGCa -3' miRNA: 3'- cGCCGCGCGc--GAAGCU--AU------------AAAUGCUG- -5' |
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27944 | 3' | -50.7 | NC_005886.2 | + | 13603 | 0.72 | 0.608116 |
Target: 5'- uCGGCGCGUaCUUCGGU----ACGGCg -3' miRNA: 3'- cGCCGCGCGcGAAGCUAuaaaUGCUG- -5' |
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27944 | 3' | -50.7 | NC_005886.2 | + | 17306 | 0.73 | 0.544748 |
Target: 5'- uUGGCGCGCGUucagcgacgaauggaUuuUCGAgAUUUGCGGCa -3' miRNA: 3'- cGCCGCGCGCG---------------A--AGCUaUAAAUGCUG- -5' |
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27944 | 3' | -50.7 | NC_005886.2 | + | 20057 | 0.67 | 0.870002 |
Target: 5'- aCGGCaCGCGCUU-GAUcagUGCGAUa -3' miRNA: 3'- cGCCGcGCGCGAAgCUAuaaAUGCUG- -5' |
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27944 | 3' | -50.7 | NC_005886.2 | + | 22135 | 0.68 | 0.815958 |
Target: 5'- uCGaGC-CGCGCgUCGGUAUUUuCGGCg -3' miRNA: 3'- cGC-CGcGCGCGaAGCUAUAAAuGCUG- -5' |
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27944 | 3' | -50.7 | NC_005886.2 | + | 22251 | 0.7 | 0.699333 |
Target: 5'- aUGGCGCGCaaaUUGAUGaUUGCGGCg -3' miRNA: 3'- cGCCGCGCGcgaAGCUAUaAAUGCUG- -5' |
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27944 | 3' | -50.7 | NC_005886.2 | + | 23693 | 0.66 | 0.914504 |
Target: 5'- -aGGCGUGCGUggCGAUGcUga-GGCa -3' miRNA: 3'- cgCCGCGCGCGaaGCUAUaAaugCUG- -5' |
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27944 | 3' | -50.7 | NC_005886.2 | + | 23926 | 0.68 | 0.796158 |
Target: 5'- aGCGGaUGCGCuGUagUCGAUGUcgauuccugUGCGACg -3' miRNA: 3'- -CGCC-GCGCG-CGa-AGCUAUAa--------AUGCUG- -5' |
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27944 | 3' | -50.7 | NC_005886.2 | + | 24227 | 0.67 | 0.859903 |
Target: 5'- aGCGGCacacuuggagaaCGCGCaagCGGUAgaUACGGCg -3' miRNA: 3'- -CGCCGc-----------GCGCGaa-GCUAUaaAUGCUG- -5' |
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27944 | 3' | -50.7 | NC_005886.2 | + | 24996 | 0.69 | 0.742543 |
Target: 5'- cCGGCucaccggaagcauGCGCGCUUCGAUcaacgcCGGCa -3' miRNA: 3'- cGCCG-------------CGCGCGAAGCUAuaaau-GCUG- -5' |
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27944 | 3' | -50.7 | NC_005886.2 | + | 31930 | 0.67 | 0.844063 |
Target: 5'- uGCGuaaGCGCGCGUUgCGAUccggUGCGAg -3' miRNA: 3'- -CGC---CGCGCGCGAaGCUAuaa-AUGCUg -5' |
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27944 | 3' | -50.7 | NC_005886.2 | + | 32556 | 0.67 | 0.852963 |
Target: 5'- aGCGuuCGCGCGUUcguuaUCGAcugUUGCGGCg -3' miRNA: 3'- -CGCc-GCGCGCGA-----AGCUauaAAUGCUG- -5' |
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27944 | 3' | -50.7 | NC_005886.2 | + | 32613 | 0.67 | 0.844063 |
Target: 5'- cGCGGUGCGUGCagCGcaugcaggGUUUGCaGCg -3' miRNA: 3'- -CGCCGCGCGCGaaGCua------UAAAUGcUG- -5' |
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27944 | 3' | -50.7 | NC_005886.2 | + | 33949 | 0.71 | 0.661899 |
Target: 5'- uCGGCGCG-GCUUCGGUAgucgggaucagguCGGCa -3' miRNA: 3'- cGCCGCGCgCGAAGCUAUaaau---------GCUG- -5' |
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27944 | 3' | -50.7 | NC_005886.2 | + | 34062 | 1.13 | 0.001355 |
Target: 5'- uGCGGCGCGCGCUUCGAUAUUUACGACg -3' miRNA: 3'- -CGCCGCGCGCGAAGCUAUAAAUGCUG- -5' |
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27944 | 3' | -50.7 | NC_005886.2 | + | 35200 | 0.66 | 0.914504 |
Target: 5'- gGCGGCGUGCGCacuggUCGAa--------- -3' miRNA: 3'- -CGCCGCGCGCGa----AGCUauaaaugcug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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