miRNA: 3'- -CGCCGCgCgCGAAGCU-------AUAaaUGCUG- -5'
miRNA: 3'- cGCCGCGCGCG---------------A--AGCUaUAAAUGCUG- -5'
miRNA: 3'- -CGCCGCGCGCGaaGCUaua-----AAUGCUG- -5'
miRNA: 3'- -CGCCGCGCGcGAAGCuauaaauGCUG- -5'
miRNA: 3'- -CGCCGCGCGCGAAGCUAUAAAUGCUG- -5'
Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 27944 | 3' | -50.7 | NC_005886.2 | + | 1235 | 0.72 | 0.561557 |
|
Target: 5'- gGCGGCGgGgGCUUCGGcccucacUAUc-GCGACg -3' miRNA: 3'- -CGCCGCgCgCGAAGCU-------AUAaaUGCUG- -5' |
|||||||
| 27944 | 3' | -50.7 | NC_005886.2 | + | 17306 | 0.73 | 0.544748 |
|
Target: 5'- uUGGCGCGCGUucagcgacgaauggaUuuUCGAgAUUUGCGGCa -3' miRNA: 3'- cGCCGCGCGCG---------------A--AGCUaUAAAUGCUG- -5' |
|||||||
| 27944 | 3' | -50.7 | NC_005886.2 | + | 1518 | 0.73 | 0.518211 |
|
Target: 5'- cGUGGCGUGCGUggCGGgcuuguggUUACGAUg -3' miRNA: 3'- -CGCCGCGCGCGaaGCUaua-----AAUGCUG- -5' |
|||||||
| 27944 | 3' | -50.7 | NC_005886.2 | + | 43209 | 0.74 | 0.475201 |
|
Target: 5'- cGCGGCGCGCuCUUCGu------CGACg -3' miRNA: 3'- -CGCCGCGCGcGAAGCuauaaauGCUG- -5' |
|||||||
| 27944 | 3' | -50.7 | NC_005886.2 | + | 34062 | 1.13 | 0.001355 |
|
Target: 5'- uGCGGCGCGCGCUUCGAUAUUUACGACg -3' miRNA: 3'- -CGCCGCGCGCGAAGCUAUAAAUGCUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home