Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27944 | 5' | -58.1 | NC_005886.2 | + | 34023 | 1.09 | 0.000492 |
Target: 5'- cUGAUCCCGACUACCGAAGCCGCGCCGa -3' miRNA: 3'- -ACUAGGGCUGAUGGCUUCGGCGCGGC- -5' |
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27944 | 5' | -58.1 | NC_005886.2 | + | 44102 | 0.75 | 0.140034 |
Target: 5'- aUGAUgCCGACccCCGucGCUGCGCCGc -3' miRNA: 3'- -ACUAgGGCUGauGGCuuCGGCGCGGC- -5' |
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27944 | 5' | -58.1 | NC_005886.2 | + | 41251 | 0.73 | 0.203377 |
Target: 5'- uUGAUCggCGuACUACCGAagugaagugcuacAGCCGCGCUGa -3' miRNA: 3'- -ACUAGg-GC-UGAUGGCU-------------UCGGCGCGGC- -5' |
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27944 | 5' | -58.1 | NC_005886.2 | + | 17210 | 0.71 | 0.270583 |
Target: 5'- cGAUUCCGACaccGCUGucGCCGCugucGCCGg -3' miRNA: 3'- aCUAGGGCUGa--UGGCuuCGGCG----CGGC- -5' |
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27944 | 5' | -58.1 | NC_005886.2 | + | 13175 | 0.71 | 0.29158 |
Target: 5'- cGAaUCCGGCUAUCGAuGUCGCGCa- -3' miRNA: 3'- aCUaGGGCUGAUGGCUuCGGCGCGgc -5' |
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27944 | 5' | -58.1 | NC_005886.2 | + | 1017 | 0.7 | 0.329365 |
Target: 5'- cGGUUCCGAUgu-CGAAGCCGCaacgugcaGCCGu -3' miRNA: 3'- aCUAGGGCUGaugGCUUCGGCG--------CGGC- -5' |
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27944 | 5' | -58.1 | NC_005886.2 | + | 36374 | 0.69 | 0.353717 |
Target: 5'- cGAUgCCGccgauGCcGCCGAuGCCGCcGCCGa -3' miRNA: 3'- aCUAgGGC-----UGaUGGCUuCGGCG-CGGC- -5' |
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27944 | 5' | -58.1 | NC_005886.2 | + | 33970 | 0.68 | 0.421833 |
Target: 5'- gGAUCagguCGGCaucaccgucguaaaUAUCGAAGCgCGCGCCGc -3' miRNA: 3'- aCUAGg---GCUG--------------AUGGCUUCG-GCGCGGC- -5' |
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27944 | 5' | -58.1 | NC_005886.2 | + | 13528 | 0.67 | 0.453345 |
Target: 5'- --cUUCgGACgccgUACCGAAGUaCGCGCCGa -3' miRNA: 3'- acuAGGgCUG----AUGGCUUCG-GCGCGGC- -5' |
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27944 | 5' | -58.1 | NC_005886.2 | + | 16953 | 0.67 | 0.473055 |
Target: 5'- ---aUCCGugUACgGuucGCCGUGCCGa -3' miRNA: 3'- acuaGGGCugAUGgCuu-CGGCGCGGC- -5' |
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27944 | 5' | -58.1 | NC_005886.2 | + | 44671 | 0.67 | 0.48307 |
Target: 5'- uUGAUCacauCGACaucAUgGAAGuuGCGCCGg -3' miRNA: 3'- -ACUAGg---GCUGa--UGgCUUCggCGCGGC- -5' |
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27944 | 5' | -58.1 | NC_005886.2 | + | 14619 | 0.66 | 0.503399 |
Target: 5'- cGGUCuCCGACgcgAUC-AAGCCuaGCGCCa -3' miRNA: 3'- aCUAG-GGCUGa--UGGcUUCGG--CGCGGc -5' |
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27944 | 5' | -58.1 | NC_005886.2 | + | 36426 | 0.66 | 0.513702 |
Target: 5'- ---gCCCGGCcgccGCCGAuGCCGC-CCGu -3' miRNA: 3'- acuaGGGCUGa---UGGCUuCGGCGcGGC- -5' |
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27944 | 5' | -58.1 | NC_005886.2 | + | 37279 | 0.66 | 0.517848 |
Target: 5'- gGGUgCgGACgUGCCGAcgacgaaguauugcGCCGCGCCa -3' miRNA: 3'- aCUAgGgCUG-AUGGCUu-------------CGGCGCGGc -5' |
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27944 | 5' | -58.1 | NC_005886.2 | + | 41891 | 0.66 | 0.555706 |
Target: 5'- cUGcgCCgGAC-GCCGcccCCGCGCCGu -3' miRNA: 3'- -ACuaGGgCUGaUGGCuucGGCGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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