Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 27945 | 5' | -59.9 | NC_005886.2 | + | 45017 | 0.66 | 0.433974 |
|
Target: 5'- cCGcACGGCUaUCaauucuauuaUCAGC-CGCCuucauGGGUGCa -3' miRNA: 3'- -GC-UGCCGA-AG----------AGUCGcGCGG-----CCCACG- -5' |
|||||||
| 27945 | 5' | -59.9 | NC_005886.2 | + | 3213 | 0.67 | 0.404507 |
|
Target: 5'- aCGuCGGCUUCaUCGGgaaGCGgaccuaguggaaCGGGUGCg -3' miRNA: 3'- -GCuGCCGAAG-AGUCg--CGCg-----------GCCCACG- -5' |
|||||||
| 27945 | 5' | -59.9 | NC_005886.2 | + | 29500 | 0.67 | 0.39734 |
|
Target: 5'- aCGACGGUaggCgCAGCGUugaCGGGUGUu -3' miRNA: 3'- -GCUGCCGaa-GaGUCGCGcg-GCCCACG- -5' |
|||||||
| 27945 | 5' | -59.9 | NC_005886.2 | + | 36239 | 0.68 | 0.346261 |
|
Target: 5'- gGGCGGCaUCggCGGCG-GCaCGGGcgGCg -3' miRNA: 3'- gCUGCCGaAGa-GUCGCgCG-GCCCa-CG- -5' |
|||||||
| 27945 | 5' | -59.9 | NC_005886.2 | + | 36356 | 0.68 | 0.346261 |
|
Target: 5'- gGGCGGCaUCggCGGCG-GCaCGGGcgGCg -3' miRNA: 3'- gCUGCCGaAGa-GUCGCgCG-GCCCa-CG- -5' |
|||||||
| 27945 | 5' | -59.9 | NC_005886.2 | + | 36188 | 0.68 | 0.346261 |
|
Target: 5'- gGGCGGCaUCggCGGCG-GCaCGGGcgGCa -3' miRNA: 3'- gCUGCCGaAGa-GUCGCgCG-GCCCa-CG- -5' |
|||||||
| 27945 | 5' | -59.9 | NC_005886.2 | + | 36316 | 0.68 | 0.314912 |
|
Target: 5'- uCGGCGGCa--UCGGCG-GCaCGGGcgGCa -3' miRNA: 3'- -GCUGCCGaagAGUCGCgCG-GCCCa-CG- -5' |
|||||||
| 27945 | 5' | -59.9 | NC_005886.2 | + | 40314 | 0.69 | 0.307418 |
|
Target: 5'- uGACGGCU--UCGGCaaGuuGGcGUGCg -3' miRNA: 3'- gCUGCCGAagAGUCGcgCggCC-CACG- -5' |
|||||||
| 27945 | 5' | -59.9 | NC_005886.2 | + | 17572 | 0.72 | 0.185265 |
|
Target: 5'- cCGAUGGCacguugcaaUCcGUGaCGCCGGGUGCa -3' miRNA: 3'- -GCUGCCGaag------AGuCGC-GCGGCCCACG- -5' |
|||||||
| 27945 | 5' | -59.9 | NC_005886.2 | + | 35534 | 1.12 | 0.000203 |
|
Target: 5'- gCGACGGCUUCUCAGCGCGCCGGGUGCa -3' miRNA: 3'- -GCUGCCGAAGAGUCGCGCGGCCCACG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home