Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27947 | 3' | -57.3 | NC_005886.2 | + | 16208 | 0.71 | 0.315615 |
Target: 5'- cGgGUuaCGCGCCGGU-CUGACGGUagguUGCg -3' miRNA: 3'- -CgCA--GCGCGGCCAcGACUGUCAc---ACG- -5' |
|||||||
27947 | 3' | -57.3 | NC_005886.2 | + | 41347 | 1.14 | 0.000255 |
Target: 5'- gGCGUCGCGCCGGUGCUGACAGUGUGCg -3' miRNA: 3'- -CGCAGCGCGGCCACGACUGUCACACG- -5' |
|||||||
27947 | 3' | -57.3 | NC_005886.2 | + | 1727 | 0.72 | 0.24557 |
Target: 5'- cCGUUGCgGCgGGUGC-GGCAGUG-GCa -3' miRNA: 3'- cGCAGCG-CGgCCACGaCUGUCACaCG- -5' |
|||||||
27947 | 3' | -57.3 | NC_005886.2 | + | 41569 | 0.72 | 0.258468 |
Target: 5'- gGCGUCaGCGCCGGacGUUG-CGGccgGUGCg -3' miRNA: 3'- -CGCAG-CGCGGCCa-CGACuGUCa--CACG- -5' |
|||||||
27947 | 3' | -57.3 | NC_005886.2 | + | 7162 | 0.71 | 0.307978 |
Target: 5'- uGCGUCgaucgccacgGUGCCGGUGCUcgcgcuCGGUGgcgGCg -3' miRNA: 3'- -CGCAG----------CGCGGCCACGAcu----GUCACa--CG- -5' |
|||||||
27947 | 3' | -57.3 | NC_005886.2 | + | 35320 | 0.66 | 0.581493 |
Target: 5'- cGUGcUCGCGCCaGUucGCUGACA---UGCa -3' miRNA: 3'- -CGC-AGCGCGGcCA--CGACUGUcacACG- -5' |
|||||||
27947 | 3' | -57.3 | NC_005886.2 | + | 22890 | 0.66 | 0.592338 |
Target: 5'- gGCGauagCGUGCCGGUGCUcACcGcGcUGCa -3' miRNA: 3'- -CGCa---GCGCGGCCACGAcUGuCaC-ACG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home