Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27947 | 5' | -55.7 | NC_005886.2 | + | 41311 | 1.08 | 0.000831 |
Target: 5'- cUGACACCCGUGAACACAGCGGACGCAu -3' miRNA: 3'- -ACUGUGGGCACUUGUGUCGCCUGCGU- -5' |
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27947 | 5' | -55.7 | NC_005886.2 | + | 40739 | 0.75 | 0.199177 |
Target: 5'- -uGCAUCCGUGGAUACccucgcuguucgAGCGGAUGCGg -3' miRNA: 3'- acUGUGGGCACUUGUG------------UCGCCUGCGU- -5' |
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27947 | 5' | -55.7 | NC_005886.2 | + | 30065 | 0.74 | 0.239982 |
Target: 5'- --cCAUCCGU-AACGCAGCGGACGUu -3' miRNA: 3'- acuGUGGGCAcUUGUGUCGCCUGCGu -5' |
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27947 | 5' | -55.7 | NC_005886.2 | + | 20913 | 0.73 | 0.259508 |
Target: 5'- aUGAUGCCgGUcGAu--CAGCGGACGCAu -3' miRNA: 3'- -ACUGUGGgCA-CUuguGUCGCCUGCGU- -5' |
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27947 | 5' | -55.7 | NC_005886.2 | + | 25831 | 0.73 | 0.266299 |
Target: 5'- cGuCACCCGuUGAACGCAGCcauaGCGCAa -3' miRNA: 3'- aCuGUGGGC-ACUUGUGUCGcc--UGCGU- -5' |
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27947 | 5' | -55.7 | NC_005886.2 | + | 38249 | 0.73 | 0.280311 |
Target: 5'- cUGACGuucaucaauCuuGUGAACagcuACGGCGGACGCGc -3' miRNA: 3'- -ACUGU---------GggCACUUG----UGUCGCCUGCGU- -5' |
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27947 | 5' | -55.7 | NC_005886.2 | + | 16830 | 0.7 | 0.413353 |
Target: 5'- cGACACCUGUacacggcucGAACGCgcuucuucgAGCGG-CGCAa -3' miRNA: 3'- aCUGUGGGCA---------CUUGUG---------UCGCCuGCGU- -5' |
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27947 | 5' | -55.7 | NC_005886.2 | + | 46218 | 0.69 | 0.462205 |
Target: 5'- cGACG-CCGUaGACAUAGCGGACa-- -3' miRNA: 3'- aCUGUgGGCAcUUGUGUCGCCUGcgu -5' |
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27947 | 5' | -55.7 | NC_005886.2 | + | 43753 | 0.66 | 0.612002 |
Target: 5'- --uCGgCCGUGAcgcugGCGCAGCguuGGGCGCGc -3' miRNA: 3'- acuGUgGGCACU-----UGUGUCG---CCUGCGU- -5' |
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27947 | 5' | -55.7 | NC_005886.2 | + | 42098 | 0.66 | 0.645324 |
Target: 5'- cGACAgCCG-GAAuCAUGGCGGGCuGUg -3' miRNA: 3'- aCUGUgGGCaCUU-GUGUCGCCUG-CGu -5' |
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27947 | 5' | -55.7 | NC_005886.2 | + | 33492 | 0.66 | 0.667495 |
Target: 5'- cGuCGCCaCGUuGACGCAGCGaaguuagcguGACGCGu -3' miRNA: 3'- aCuGUGG-GCAcUUGUGUCGC----------CUGCGU- -5' |
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27947 | 5' | -55.7 | NC_005886.2 | + | 17552 | 0.66 | 0.667495 |
Target: 5'- gUGACGCCgGgUGcAGCACugccgGGCGGuucgACGCAg -3' miRNA: 3'- -ACUGUGGgC-AC-UUGUG-----UCGCC----UGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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