miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27948 3' -59 NC_005886.2 + 44493 0.66 0.530375
Target:  5'- uGCAACGUUGaGCGgCuGCGaaCCGGGCc -3'
miRNA:   3'- cCGUUGCAGC-CGCaGuCGC--GGCCUGc -5'
27948 3' -59 NC_005886.2 + 22129 0.66 0.509865
Target:  5'- cGC-GCGUCGGUauuuUCGGCGCgGGAg- -3'
miRNA:   3'- cCGuUGCAGCCGc---AGUCGCGgCCUgc -5'
27948 3' -59 NC_005886.2 + 41502 0.66 0.509865
Target:  5'- cGCAACGUcCGGCG-CuGaCGCC-GACGu -3'
miRNA:   3'- cCGUUGCA-GCCGCaGuC-GCGGcCUGC- -5'
27948 3' -59 NC_005886.2 + 13623 0.66 0.499735
Target:  5'- cGCAACGagugCGGCGgaugUCGGCGCguacuuCGGuACGg -3'
miRNA:   3'- cCGUUGCa---GCCGC----AGUCGCG------GCC-UGC- -5'
27948 3' -59 NC_005886.2 + 41962 0.66 0.489695
Target:  5'- cGGC-GCGggggCGGCGUcCGGCGCa-GGCa -3'
miRNA:   3'- -CCGuUGCa---GCCGCA-GUCGCGgcCUGc -5'
27948 3' -59 NC_005886.2 + 19487 0.67 0.450532
Target:  5'- uGCGACGUacacaaCGcCAGCgGCCGGACGu -3'
miRNA:   3'- cCGUUGCAgcc---GCaGUCG-CGGCCUGC- -5'
27948 3' -59 NC_005886.2 + 46742 0.67 0.422318
Target:  5'- uGCGGCGggcUGGUGgaaCA-CGCCGGACGg -3'
miRNA:   3'- cCGUUGCa--GCCGCa--GUcGCGGCCUGC- -5'
27948 3' -59 NC_005886.2 + 17553 0.67 0.422318
Target:  5'- cGUGACGcCGG-GUgCAGCacuGCCGGGCGg -3'
miRNA:   3'- cCGUUGCaGCCgCA-GUCG---CGGCCUGC- -5'
27948 3' -59 NC_005886.2 + 38657 0.68 0.404109
Target:  5'- gGGCGACGUUGaGaaucaccucgucCGUCGGCGCgucaGGAUGc -3'
miRNA:   3'- -CCGUUGCAGC-C------------GCAGUCGCGg---CCUGC- -5'
27948 3' -59 NC_005886.2 + 20132 0.68 0.395193
Target:  5'- -cCGACGuaUCGaGCGUCAaauCGCCGGACa -3'
miRNA:   3'- ccGUUGC--AGC-CGCAGUc--GCGGCCUGc -5'
27948 3' -59 NC_005886.2 + 17132 0.68 0.386405
Target:  5'- cGGCGACaG-CGGCGacagCGGUGUCGGAa- -3'
miRNA:   3'- -CCGUUG-CaGCCGCa---GUCGCGGCCUgc -5'
27948 3' -59 NC_005886.2 + 5878 0.68 0.368374
Target:  5'- cGGCuguCGUCGauuuccaGUGUCAGaCGCCGGGg- -3'
miRNA:   3'- -CCGuu-GCAGC-------CGCAGUC-GCGGCCUgc -5'
27948 3' -59 NC_005886.2 + 37094 0.7 0.295659
Target:  5'- cGGCAGgacuCGUCGGCGUCuacuucggcaagcGCGCCGaacugcgcacGACGu -3'
miRNA:   3'- -CCGUU----GCAGCCGCAGu------------CGCGGC----------CUGC- -5'
27948 3' -59 NC_005886.2 + 30409 0.71 0.270665
Target:  5'- cGGCAAUaGUCGGgGUCGaaGuuGGACGc -3'
miRNA:   3'- -CCGUUG-CAGCCgCAGUcgCggCCUGC- -5'
27948 3' -59 NC_005886.2 + 36356 0.71 0.25753
Target:  5'- gGGCGGCaUCGGCGgCGGCa-CGGGCGg -3'
miRNA:   3'- -CCGUUGcAGCCGCaGUCGcgGCCUGC- -5'
27948 3' -59 NC_005886.2 + 43754 0.73 0.194414
Target:  5'- cGGCcguGACGcUGGCG-CAGCGuuGGGCGc -3'
miRNA:   3'- -CCG---UUGCaGCCGCaGUCGCggCCUGC- -5'
27948 3' -59 NC_005886.2 + 36197 0.73 0.184504
Target:  5'- cGGCGGCGgcacgggCGGCaUCGGCGgCGGcACGg -3'
miRNA:   3'- -CCGUUGCa------GCCGcAGUCGCgGCC-UGC- -5'
27948 3' -59 NC_005886.2 + 36248 0.75 0.130382
Target:  5'- cGGCGGCGgcacgggCGGCGgCGGCGgCaCGGGCGg -3'
miRNA:   3'- -CCGUUGCa------GCCGCaGUCGC-G-GCCUGC- -5'
27948 3' -59 NC_005886.2 + 36308 0.76 0.116927
Target:  5'- cGGCGGCaUCGGCGgcaUCGGCGgCaCGGGCGg -3'
miRNA:   3'- -CCGUUGcAGCCGC---AGUCGC-G-GCCUGC- -5'
27948 3' -59 NC_005886.2 + 41579 1.1 0.00039
Target:  5'- uGGCAACGUCGGCGUCAGCGCCGGACGu -3'
miRNA:   3'- -CCGUUGCAGCCGCAGUCGCGGCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.