Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27948 | 5' | -56.4 | NC_005886.2 | + | 17363 | 0.67 | 0.520581 |
Target: 5'- cUGuCGUUaaaCGGuCGUCGGGCCgAUCgGCAGc -3' miRNA: 3'- -AC-GCAA---GCC-GCAGUCUGGgUAG-CGUC- -5' |
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27948 | 5' | -56.4 | NC_005886.2 | + | 22704 | 0.67 | 0.541897 |
Target: 5'- gGCGaUCguaccuaguGGCGUCAGACCagcugcguUAUCGCAc -3' miRNA: 3'- aCGCaAG---------CCGCAGUCUGG--------GUAGCGUc -5' |
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27948 | 5' | -56.4 | NC_005886.2 | + | 8196 | 0.67 | 0.563495 |
Target: 5'- aGCa---GGCGUCAuGAucaacgcaccCCCAUCGCAGc -3' miRNA: 3'- aCGcaagCCGCAGU-CU----------GGGUAGCGUC- -5' |
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27948 | 5' | -56.4 | NC_005886.2 | + | 41578 | 0.68 | 0.479003 |
Target: 5'- gGCaacgUCGGCGUCAGcGCCggaCGUUGCGGc -3' miRNA: 3'- aCGca--AGCCGCAGUC-UGG---GUAGCGUC- -5' |
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27948 | 5' | -56.4 | NC_005886.2 | + | 32719 | 0.69 | 0.448918 |
Target: 5'- aUGUGguaUCGGaacguaGUaCAGGCCCAUCGuCAGu -3' miRNA: 3'- -ACGCa--AGCCg-----CA-GUCUGGGUAGC-GUC- -5' |
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27948 | 5' | -56.4 | NC_005886.2 | + | 34829 | 0.72 | 0.271865 |
Target: 5'- gGCaauUUCgGGCGguUCGGACCCGUUGCAGu -3' miRNA: 3'- aCGc--AAG-CCGC--AGUCUGGGUAGCGUC- -5' |
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27948 | 5' | -56.4 | NC_005886.2 | + | 41543 | 1.08 | 0.000784 |
Target: 5'- gUGCGUUCGGCGUCAGACCCAUCGCAGc -3' miRNA: 3'- -ACGCAAGCCGCAGUCUGGGUAGCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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