Results 1 - 17 of 17 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27949 | 5' | -56.6 | NC_005886.2 | + | 36079 | 0.75 | 0.163124 |
Target: 5'- cGGCAAGACCGCCgACaAUGCuguauccgaucagauCGAGCGa -3' miRNA: 3'- -UCGUUCUGGCGGaUGcUACG---------------GCUCGC- -5' |
|||||||
27949 | 5' | -56.6 | NC_005886.2 | + | 22579 | 0.66 | 0.612538 |
Target: 5'- cGCGAGcACaCGCCcgucCGAcUGCCGuGCGa -3' miRNA: 3'- uCGUUC-UG-GCGGau--GCU-ACGGCuCGC- -5' |
|||||||
27949 | 5' | -56.6 | NC_005886.2 | + | 39324 | 0.67 | 0.546875 |
Target: 5'- -aCGAuACCGCgCUGCGAcaucUGCUGAGUGa -3' miRNA: 3'- ucGUUcUGGCG-GAUGCU----ACGGCUCGC- -5' |
|||||||
27949 | 5' | -56.6 | NC_005886.2 | + | 29544 | 0.67 | 0.514846 |
Target: 5'- aAGCAcGACCGUUUGuuUGAacccGCCGAGCa -3' miRNA: 3'- -UCGUuCUGGCGGAU--GCUa---CGGCUCGc -5' |
|||||||
27949 | 5' | -56.6 | NC_005886.2 | + | 26915 | 0.67 | 0.504337 |
Target: 5'- cGCAAGGuuGCCggucGCGuaGUGCCGcccgGGCGc -3' miRNA: 3'- uCGUUCUggCGGa---UGC--UACGGC----UCGC- -5' |
|||||||
27949 | 5' | -56.6 | NC_005886.2 | + | 38815 | 0.68 | 0.473394 |
Target: 5'- cGCAGuGcCCGCagcgcaGCGGUcGCCGAGCGg -3' miRNA: 3'- uCGUU-CuGGCGga----UGCUA-CGGCUCGC- -5' |
|||||||
27949 | 5' | -56.6 | NC_005886.2 | + | 45483 | 0.69 | 0.433688 |
Target: 5'- cGGCAaagaAGGCCGgCgauaACGAUGCCGcgaAGCa -3' miRNA: 3'- -UCGU----UCUGGCgGa---UGCUACGGC---UCGc -5' |
|||||||
27949 | 5' | -56.6 | NC_005886.2 | + | 19175 | 0.71 | 0.327222 |
Target: 5'- uGCAAcGGCCGCUUcgAUGAUGCUGAGaCa -3' miRNA: 3'- uCGUU-CUGGCGGA--UGCUACGGCUC-Gc -5' |
|||||||
27949 | 5' | -56.6 | NC_005886.2 | + | 10453 | 0.71 | 0.319275 |
Target: 5'- cGCuuguuGCCGCgUgACGAUGCCGAGCc -3' miRNA: 3'- uCGuuc--UGGCGgA-UGCUACGGCUCGc -5' |
|||||||
27949 | 5' | -56.6 | NC_005886.2 | + | 36427 | 0.67 | 0.536122 |
Target: 5'- cGCccGGCCGCCgcCGAUGCCGccCGu -3' miRNA: 3'- uCGuuCUGGCGGauGCUACGGCucGC- -5' |
|||||||
27949 | 5' | -56.6 | NC_005886.2 | + | 29348 | 0.68 | 0.454298 |
Target: 5'- cGUAGGcGuuGCCUACGGUGCCGucaugaccuacguucGCGa -3' miRNA: 3'- uCGUUC-UggCGGAUGCUACGGCu--------------CGC- -5' |
|||||||
27949 | 5' | -56.6 | NC_005886.2 | + | 15524 | 0.68 | 0.453305 |
Target: 5'- gAGCAacaagGGugCGCCcAUGGUGaugaCGAGCGc -3' miRNA: 3'- -UCGU-----UCugGCGGaUGCUACg---GCUCGC- -5' |
|||||||
27949 | 5' | -56.6 | NC_005886.2 | + | 7162 | 0.7 | 0.351936 |
Target: 5'- uGCGucGAUCGCC-ACGGUGCCGGuGCu -3' miRNA: 3'- uCGUu-CUGGCGGaUGCUACGGCU-CGc -5' |
|||||||
27949 | 5' | -56.6 | NC_005886.2 | + | 9547 | 0.71 | 0.303818 |
Target: 5'- cGCAAGGCaaagaGCaaGCGGccgGCCGAGCGa -3' miRNA: 3'- uCGUUCUGg----CGgaUGCUa--CGGCUCGC- -5' |
|||||||
27949 | 5' | -56.6 | NC_005886.2 | + | 21375 | 0.74 | 0.190022 |
Target: 5'- cAGCAaaucauGGAacgCGUCUACGcgGCCGAGCGu -3' miRNA: 3'- -UCGU------UCUg--GCGGAUGCuaCGGCUCGC- -5' |
|||||||
27949 | 5' | -56.6 | NC_005886.2 | + | 42062 | 1.09 | 0.000546 |
Target: 5'- cAGCAAGACCGCCUACGAUGCCGAGCGg -3' miRNA: 3'- -UCGUUCUGGCGGAUGCUACGGCUCGC- -5' |
|||||||
27949 | 5' | -56.6 | NC_005886.2 | + | 45591 | 0.66 | 0.579509 |
Target: 5'- --uGAGACCGUCUGCGAucguuuuccagUGCUucGCGg -3' miRNA: 3'- ucgUUCUGGCGGAUGCU-----------ACGGcuCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home