miRNA: 3'- uuuauCGGGa---CG----AGGGAGUCUCGa--AG- -5'
miRNA: 3'- uuuauCGg-GACGA-GGGa--GUCUCGAAG- -5'
miRNA: 3'- uuuauCGGGACgAGGGaGUCUCGaag -5'
miRNA: 3'- uuuaUCGGGACG-----AGGGaGUCUCGaag -5'
miRNA: 3'- uuuaUCGGgACga-GGGAGUCUCGAAG- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 2795 | 3' | -54.4 | NC_001491.2 | + | 115776 | 0.66 | 0.913941 |
|
Target: 5'- ----cGCCCggggGUacgaUCCCUCGGGGCcggUCg -3' miRNA: 3'- uuuauCGGGa---CG----AGGGAGUCUCGa--AG- -5' |
|||||||
| 2795 | 3' | -54.4 | NC_001491.2 | + | 141355 | 0.67 | 0.857038 |
|
Target: 5'- ----uGCagCUGCUgCCCgagCAGAGCUUCc -3' miRNA: 3'- uuuauCGg-GACGA-GGGa--GUCUCGAAG- -5' |
|||||||
| 2795 | 3' | -54.4 | NC_001491.2 | + | 146521 | 0.7 | 0.705784 |
|
Target: 5'- ----cGCCCUGgUCCC-CGGAGCg-- -3' miRNA: 3'- uuuauCGGGACgAGGGaGUCUCGaag -5' |
|||||||
| 2795 | 3' | -54.4 | NC_001491.2 | + | 40999 | 0.7 | 0.69532 |
|
Target: 5'- ---gGGCCCUGCuuauuUCCC-CGGAGCg-- -3' miRNA: 3'- uuuaUCGGGACG-----AGGGaGUCUCGaag -5' |
|||||||
| 2795 | 3' | -54.4 | NC_001491.2 | + | 114545 | 0.75 | 0.4378 |
|
Target: 5'- ---gGGCCgUGgagCCCUCGGAGCUUCu -3' miRNA: 3'- uuuaUCGGgACga-GGGAGUCUCGAAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home