miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2795 5' -50.4 NC_001491.2 + 105976 0.66 0.991037
Target:  5'- --cACAGCCGCAcCAGGGAcgaccgAGGccgagaagaaacacGCUCa -3'
miRNA:   3'- uuuUGUUGGCGUuGUCUCU------UCC--------------CGAG- -5'
2795 5' -50.4 NC_001491.2 + 55886 0.66 0.990128
Target:  5'- --cGCAAgCGCGGguGAGGuugGGGGCa- -3'
miRNA:   3'- uuuUGUUgGCGUUguCUCU---UCCCGag -5'
2795 5' -50.4 NC_001491.2 + 146500 0.66 0.990128
Target:  5'- --cGCGGCCGCGGCAGccuugcgucggGGcccGAGGGC-Cg -3'
miRNA:   3'- uuuUGUUGGCGUUGUC-----------UC---UUCCCGaG- -5'
2795 5' -50.4 NC_001491.2 + 144674 0.66 0.990128
Target:  5'- ---uCGGCCGCGcuggcugcGCGGAuGAGGGGgUCc -3'
miRNA:   3'- uuuuGUUGGCGU--------UGUCU-CUUCCCgAG- -5'
2795 5' -50.4 NC_001491.2 + 117773 0.66 0.989992
Target:  5'- ---cCAGCCGCccgggaGGAGGccuccucccuccgGGGGCUCg -3'
miRNA:   3'- uuuuGUUGGCGuug---UCUCU-------------UCCCGAG- -5'
2795 5' -50.4 NC_001491.2 + 69655 0.66 0.989716
Target:  5'- uGAAC-ACCGCGaguaaaaaucuacaGCGGaAGggGGGCa- -3'
miRNA:   3'- uUUUGuUGGCGU--------------UGUC-UCuuCCCGag -5'
2795 5' -50.4 NC_001491.2 + 14926 0.66 0.988705
Target:  5'- -uGGCAgcACUGCGcUGGGGGAGGGCg- -3'
miRNA:   3'- uuUUGU--UGGCGUuGUCUCUUCCCGag -5'
2795 5' -50.4 NC_001491.2 + 146624 0.66 0.988705
Target:  5'- cGGACGccccGCCGCGgagGCGcAGGAGGGcCUCg -3'
miRNA:   3'- uUUUGU----UGGCGU---UGUcUCUUCCC-GAG- -5'
2795 5' -50.4 NC_001491.2 + 127872 0.66 0.987127
Target:  5'- ---uUAAUCGCAAUuGuuGGGGGCUCa -3'
miRNA:   3'- uuuuGUUGGCGUUGuCucUUCCCGAG- -5'
2795 5' -50.4 NC_001491.2 + 125582 0.67 0.985385
Target:  5'- -cGGCGGCCGU--CGGAGggGGGg-- -3'
miRNA:   3'- uuUUGUUGGCGuuGUCUCuuCCCgag -5'
2795 5' -50.4 NC_001491.2 + 44560 0.67 0.983469
Target:  5'- gAAGugGAUUGgGGCAGAGggGGaGCg- -3'
miRNA:   3'- -UUUugUUGGCgUUGUCUCuuCC-CGag -5'
2795 5' -50.4 NC_001491.2 + 44497 0.67 0.983469
Target:  5'- gAAGugGAUUGgGGCAGAGggGGaGCg- -3'
miRNA:   3'- -UUUugUUGGCgUUGUCUCuuCC-CGag -5'
2795 5' -50.4 NC_001491.2 + 44435 0.67 0.983469
Target:  5'- gAAGugGAUUGgGGCAGAGggGGaGCg- -3'
miRNA:   3'- -UUUugUUGGCgUUGUCUCuuCC-CGag -5'
2795 5' -50.4 NC_001491.2 + 44372 0.67 0.983469
Target:  5'- gAAGugGAUUGgGGCAGAGggGGaGCg- -3'
miRNA:   3'- -UUUugUUGGCgUUGUCUCuuCC-CGag -5'
2795 5' -50.4 NC_001491.2 + 75627 0.67 0.983469
Target:  5'- aAAAACAAUgGCAAUAGGGGGcacaacccGGuGCUCc -3'
miRNA:   3'- -UUUUGUUGgCGUUGUCUCUU--------CC-CGAG- -5'
2795 5' -50.4 NC_001491.2 + 48591 0.67 0.976576
Target:  5'- cGGACAACCGUAugccCGGu--GGGGCUUg -3'
miRNA:   3'- uUUUGUUGGCGUu---GUCucuUCCCGAG- -5'
2795 5' -50.4 NC_001491.2 + 65772 0.68 0.970936
Target:  5'- gAGAGCGcucACCGCGcccaggcgagcGCAGAGccGGGCg- -3'
miRNA:   3'- -UUUUGU---UGGCGU-----------UGUCUCuuCCCGag -5'
2795 5' -50.4 NC_001491.2 + 144547 0.68 0.964383
Target:  5'- gAGAAcCAACCGCAc--GAGAAGGcucGCUCg -3'
miRNA:   3'- -UUUU-GUUGGCGUuguCUCUUCC---CGAG- -5'
2795 5' -50.4 NC_001491.2 + 45716 0.68 0.963318
Target:  5'- cAGAACGGCCGCuugaggggucgucgGugGGAGAAucGGGCa- -3'
miRNA:   3'- -UUUUGUUGGCG--------------UugUCUCUU--CCCGag -5'
2795 5' -50.4 NC_001491.2 + 123552 0.68 0.960746
Target:  5'- cGAugGGCCgaggGCAGCuGGAGAGGGaGCUUg -3'
miRNA:   3'- uUUugUUGG----CGUUG-UCUCUUCC-CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.