miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2795 5' -50.4 NC_001491.2 + 123552 0.68 0.960746
Target:  5'- cGAugGGCCgaggGCAGCuGGAGAGGGaGCUUg -3'
miRNA:   3'- uUUugUUGG----CGUUG-UCUCUUCC-CGAG- -5'
2795 5' -50.4 NC_001491.2 + 54473 0.69 0.956859
Target:  5'- -cAGCAGCCGCcu---GGGAGGGUUCa -3'
miRNA:   3'- uuUUGUUGGCGuugucUCUUCCCGAG- -5'
2795 5' -50.4 NC_001491.2 + 16993 0.69 0.952718
Target:  5'- gGAAGgGGCUGCAAgaguguaacccCGGAGAgugcuaugaGGGGCUCu -3'
miRNA:   3'- -UUUUgUUGGCGUU-----------GUCUCU---------UCCCGAG- -5'
2795 5' -50.4 NC_001491.2 + 54610 0.69 0.952718
Target:  5'- cAGAGCGGCgGCAGCggcgGGGGAugguGGGGCg- -3'
miRNA:   3'- -UUUUGUUGgCGUUG----UCUCU----UCCCGag -5'
2795 5' -50.4 NC_001491.2 + 78555 0.69 0.95011
Target:  5'- ---gUAACgGCGACGGAGggGGccguacaguuaaccaGCUCa -3'
miRNA:   3'- uuuuGUUGgCGUUGUCUCuuCC---------------CGAG- -5'
2795 5' -50.4 NC_001491.2 + 100156 0.69 0.947864
Target:  5'- aGAAACugauguuGACCcuCGACGGAcaGGAGGGCUCg -3'
miRNA:   3'- -UUUUG-------UUGGc-GUUGUCU--CUUCCCGAG- -5'
2795 5' -50.4 NC_001491.2 + 110278 0.69 0.943655
Target:  5'- gGGGGCAACCGCGAa--AGggGGaGCUUu -3'
miRNA:   3'- -UUUUGUUGGCGUUgucUCuuCC-CGAG- -5'
2795 5' -50.4 NC_001491.2 + 118539 0.69 0.943655
Target:  5'- --cGCAGCCagcGCGGCcGaAGAGGGGUUCa -3'
miRNA:   3'- uuuUGUUGG---CGUUGuC-UCUUCCCGAG- -5'
2795 5' -50.4 NC_001491.2 + 148966 0.71 0.88004
Target:  5'- ----gGAgCGCGGCGGAGGgccugggccacgccGGGGCUCg -3'
miRNA:   3'- uuuugUUgGCGUUGUCUCU--------------UCCCGAG- -5'
2795 5' -50.4 NC_001491.2 + 100581 0.72 0.842014
Target:  5'- gGAGGCGuACCGCu-CGGAGGAGGaGCUg -3'
miRNA:   3'- -UUUUGU-UGGCGuuGUCUCUUCC-CGAg -5'
2795 5' -50.4 NC_001491.2 + 116699 0.72 0.842014
Target:  5'- --cGCGGCCGCucCGGGGAccAGGGCg- -3'
miRNA:   3'- uuuUGUUGGCGuuGUCUCU--UCCCGag -5'
2795 5' -50.4 NC_001491.2 + 125106 0.72 0.833281
Target:  5'- --cGCAGCCGCGGCc-GGggGGGC-Cg -3'
miRNA:   3'- uuuUGUUGGCGUUGucUCuuCCCGaG- -5'
2795 5' -50.4 NC_001491.2 + 123494 0.74 0.775881
Target:  5'- -cGGCGGCUGCGugGCGGGGGAacagcucGGGCUCg -3'
miRNA:   3'- uuUUGUUGGCGU--UGUCUCUU-------CCCGAG- -5'
2795 5' -50.4 NC_001491.2 + 42537 0.74 0.746549
Target:  5'- ---uCGGCCGCAGCcuGGgcGGGCUCu -3'
miRNA:   3'- uuuuGUUGGCGUUGucUCuuCCCGAG- -5'
2795 5' -50.4 NC_001491.2 + 33465 0.76 0.660419
Target:  5'- cGAGCAGCCGgc-CAGAGAguugaccAGGGCUCg -3'
miRNA:   3'- uUUUGUUGGCguuGUCUCU-------UCCCGAG- -5'
2795 5' -50.4 NC_001491.2 + 147049 0.88 0.154569
Target:  5'- --cGCGGCCGCGGagcCGGAGAAGGGCUCg -3'
miRNA:   3'- uuuUGUUGGCGUU---GUCUCUUCCCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.