miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2795 5' -50.4 NC_001491.2 + 110278 0.69 0.943655
Target:  5'- gGGGGCAACCGCGAa--AGggGGaGCUUu -3'
miRNA:   3'- -UUUUGUUGGCGUUgucUCuuCC-CGAG- -5'
2795 5' -50.4 NC_001491.2 + 116699 0.72 0.842014
Target:  5'- --cGCGGCCGCucCGGGGAccAGGGCg- -3'
miRNA:   3'- uuuUGUUGGCGuuGUCUCU--UCCCGag -5'
2795 5' -50.4 NC_001491.2 + 117773 0.66 0.989992
Target:  5'- ---cCAGCCGCccgggaGGAGGccuccucccuccgGGGGCUCg -3'
miRNA:   3'- uuuuGUUGGCGuug---UCUCU-------------UCCCGAG- -5'
2795 5' -50.4 NC_001491.2 + 118539 0.69 0.943655
Target:  5'- --cGCAGCCagcGCGGCcGaAGAGGGGUUCa -3'
miRNA:   3'- uuuUGUUGG---CGUUGuC-UCUUCCCGAG- -5'
2795 5' -50.4 NC_001491.2 + 123494 0.74 0.775881
Target:  5'- -cGGCGGCUGCGugGCGGGGGAacagcucGGGCUCg -3'
miRNA:   3'- uuUUGUUGGCGU--UGUCUCUU-------CCCGAG- -5'
2795 5' -50.4 NC_001491.2 + 123552 0.68 0.960746
Target:  5'- cGAugGGCCgaggGCAGCuGGAGAGGGaGCUUg -3'
miRNA:   3'- uUUugUUGG----CGUUG-UCUCUUCC-CGAG- -5'
2795 5' -50.4 NC_001491.2 + 125106 0.72 0.833281
Target:  5'- --cGCAGCCGCGGCc-GGggGGGC-Cg -3'
miRNA:   3'- uuuUGUUGGCGUUGucUCuuCCCGaG- -5'
2795 5' -50.4 NC_001491.2 + 125582 0.67 0.985385
Target:  5'- -cGGCGGCCGU--CGGAGggGGGg-- -3'
miRNA:   3'- uuUUGUUGGCGuuGUCUCuuCCCgag -5'
2795 5' -50.4 NC_001491.2 + 127872 0.66 0.987127
Target:  5'- ---uUAAUCGCAAUuGuuGGGGGCUCa -3'
miRNA:   3'- uuuuGUUGGCGUUGuCucUUCCCGAG- -5'
2795 5' -50.4 NC_001491.2 + 144547 0.68 0.964383
Target:  5'- gAGAAcCAACCGCAc--GAGAAGGcucGCUCg -3'
miRNA:   3'- -UUUU-GUUGGCGUuguCUCUUCC---CGAG- -5'
2795 5' -50.4 NC_001491.2 + 144674 0.66 0.990128
Target:  5'- ---uCGGCCGCGcuggcugcGCGGAuGAGGGGgUCc -3'
miRNA:   3'- uuuuGUUGGCGU--------UGUCU-CUUCCCgAG- -5'
2795 5' -50.4 NC_001491.2 + 146500 0.66 0.990128
Target:  5'- --cGCGGCCGCGGCAGccuugcgucggGGcccGAGGGC-Cg -3'
miRNA:   3'- uuuUGUUGGCGUUGUC-----------UC---UUCCCGaG- -5'
2795 5' -50.4 NC_001491.2 + 146624 0.66 0.988705
Target:  5'- cGGACGccccGCCGCGgagGCGcAGGAGGGcCUCg -3'
miRNA:   3'- uUUUGU----UGGCGU---UGUcUCUUCCC-GAG- -5'
2795 5' -50.4 NC_001491.2 + 147049 0.88 0.154569
Target:  5'- --cGCGGCCGCGGagcCGGAGAAGGGCUCg -3'
miRNA:   3'- uuuUGUUGGCGUU---GUCUCUUCCCGAG- -5'
2795 5' -50.4 NC_001491.2 + 147270 0.68 0.960746
Target:  5'- gGAGGCGGCCGCcugaGGGGAGcGGGCc- -3'
miRNA:   3'- -UUUUGUUGGCGuug-UCUCUU-CCCGag -5'
2795 5' -50.4 NC_001491.2 + 148966 0.71 0.88004
Target:  5'- ----gGAgCGCGGCGGAGGgccugggccacgccGGGGCUCg -3'
miRNA:   3'- uuuugUUgGCGUUGUCUCU--------------UCCCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.