miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27950 3' -54.6 NC_005886.2 + 21025 0.66 0.716527
Target:  5'- gCAUCuuAGgggccggCGUACGCGCGauagCGCAGa -3'
miRNA:   3'- -GUAGcgUCaa-----GCGUGCGCGUa---GCGUC- -5'
27950 3' -54.6 NC_005886.2 + 22664 0.66 0.705576
Target:  5'- uGUCGC-GUUCGCACG-GCAgUCGgaCGGg -3'
miRNA:   3'- gUAGCGuCAAGCGUGCgCGU-AGC--GUC- -5'
27950 3' -54.6 NC_005886.2 + 39395 0.66 0.694549
Target:  5'- ---aGCAGaugUCGCAgCGCGgUAUCGUAGu -3'
miRNA:   3'- guagCGUCa--AGCGU-GCGC-GUAGCGUC- -5'
27950 3' -54.6 NC_005886.2 + 33845 0.66 0.694549
Target:  5'- cUAUCGguGguuggCGUggacucaauagACGCGCAUCGUAa -3'
miRNA:   3'- -GUAGCguCaa---GCG-----------UGCGCGUAGCGUc -5'
27950 3' -54.6 NC_005886.2 + 42094 0.66 0.694549
Target:  5'- -uUCGCGcUUCGCAgGCGCAcCGUu- -3'
miRNA:   3'- guAGCGUcAAGCGUgCGCGUaGCGuc -5'
27950 3' -54.6 NC_005886.2 + 36997 0.66 0.68346
Target:  5'- uCGUgCGCAGUUCG-GCGCGC-UUGCc- -3'
miRNA:   3'- -GUA-GCGUCAAGCgUGCGCGuAGCGuc -5'
27950 3' -54.6 NC_005886.2 + 37384 0.66 0.68346
Target:  5'- aAUCGguG-UCGUcgACGCGUggCGCGGc -3'
miRNA:   3'- gUAGCguCaAGCG--UGCGCGuaGCGUC- -5'
27950 3' -54.6 NC_005886.2 + 29830 0.67 0.649932
Target:  5'- aGUCGCGcuugcucgUCGUuuucccauGCGCGCAUCGCu- -3'
miRNA:   3'- gUAGCGUca------AGCG--------UGCGCGUAGCGuc -5'
27950 3' -54.6 NC_005886.2 + 46609 0.67 0.638707
Target:  5'- cCAUCGCGcaaugcggcacGUUCGCAUGCuugGCAgCGCGu -3'
miRNA:   3'- -GUAGCGU-----------CAAGCGUGCG---CGUaGCGUc -5'
27950 3' -54.6 NC_005886.2 + 38879 0.67 0.605037
Target:  5'- cCGUCGCGacGUucaUCGCuCGCGCcAUCGCu- -3'
miRNA:   3'- -GUAGCGU--CA---AGCGuGCGCG-UAGCGuc -5'
27950 3' -54.6 NC_005886.2 + 13512 0.67 0.605037
Target:  5'- gAUC-CAGUUCGCACGCugGCAaCGUg- -3'
miRNA:   3'- gUAGcGUCAAGCGUGCG--CGUaGCGuc -5'
27950 3' -54.6 NC_005886.2 + 38201 0.68 0.593849
Target:  5'- aGUUGCGccgUCGCGUGCGCAUCGUu- -3'
miRNA:   3'- gUAGCGUca-AGCGUGCGCGUAGCGuc -5'
27950 3' -54.6 NC_005886.2 + 32614 0.68 0.582695
Target:  5'- --aCGCGGUgCGUGCaGCGCAU-GCAGg -3'
miRNA:   3'- guaGCGUCAaGCGUG-CGCGUAgCGUC- -5'
27950 3' -54.6 NC_005886.2 + 25337 0.68 0.571583
Target:  5'- uGUCGCGGaugUCGC-CGCGCuggaacgugaCGCGGa -3'
miRNA:   3'- gUAGCGUCa--AGCGuGCGCGua--------GCGUC- -5'
27950 3' -54.6 NC_005886.2 + 13699 0.68 0.560523
Target:  5'- ---aGCAGaUCGCgGCGCGCucguUCGCAa -3'
miRNA:   3'- guagCGUCaAGCG-UGCGCGu---AGCGUc -5'
27950 3' -54.6 NC_005886.2 + 6452 0.69 0.513744
Target:  5'- gCAUCGCGuauugcauuucagcGcgUUGCGCuCGCAUCGCAGu -3'
miRNA:   3'- -GUAGCGU--------------Ca-AGCGUGcGCGUAGCGUC- -5'
27950 3' -54.6 NC_005886.2 + 46617 0.69 0.495683
Target:  5'- aCAUCGCGGguuggUCGCA-GCGUGUgGCGc -3'
miRNA:   3'- -GUAGCGUCa----AGCGUgCGCGUAgCGUc -5'
27950 3' -54.6 NC_005886.2 + 42697 0.7 0.474814
Target:  5'- uGUCGCcGUUCGCgaaGUGCAUCaCAGg -3'
miRNA:   3'- gUAGCGuCAAGCGug-CGCGUAGcGUC- -5'
27950 3' -54.6 NC_005886.2 + 32169 0.7 0.454393
Target:  5'- --gCGCAGUggGCGCGUGauUCGCAGa -3'
miRNA:   3'- guaGCGUCAagCGUGCGCguAGCGUC- -5'
27950 3' -54.6 NC_005886.2 + 44920 0.71 0.385101
Target:  5'- -uUCGUGGUUCGaUGCGCGCAgucgaucggaugCGCAGa -3'
miRNA:   3'- guAGCGUCAAGC-GUGCGCGUa-----------GCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.