miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27950 5' -53.8 NC_005886.2 + 16492 0.66 0.774803
Target:  5'- gGCCccUGAacUGaACgaCGCGAACGGCGg -3'
miRNA:   3'- -CGGacACU--ACgUGaaGCGCUUGCCGC- -5'
27950 5' -53.8 NC_005886.2 + 16834 0.66 0.774803
Target:  5'- aCCUGUacacggcucGAacGCGCUUCuuCGAGCGGCGc -3'
miRNA:   3'- cGGACA---------CUa-CGUGAAGc-GCUUGCCGC- -5'
27950 5' -53.8 NC_005886.2 + 42739 0.66 0.764501
Target:  5'- -aCUGcGAUGCGCgu-GCGAACuGCGa -3'
miRNA:   3'- cgGACaCUACGUGaagCGCUUGcCGC- -5'
27950 5' -53.8 NC_005886.2 + 32580 0.67 0.723087
Target:  5'- gGCCgGUGAUGCAUucgaacucgaagcgUUCGCGcguucguuaucgacuGuuGCGGCGc -3'
miRNA:   3'- -CGGaCACUACGUG--------------AAGCGC---------------U--UGCCGC- -5'
27950 5' -53.8 NC_005886.2 + 22636 0.67 0.722004
Target:  5'- aGCCUGUGcgGUGa---GUGAgauuGCGGCGa -3'
miRNA:   3'- -CGGACACuaCGUgaagCGCU----UGCCGC- -5'
27950 5' -53.8 NC_005886.2 + 15388 0.67 0.711118
Target:  5'- uCCUGUcGAUGCGaucgucuggcggUUUCGUGuAUGGCGg -3'
miRNA:   3'- cGGACA-CUACGU------------GAAGCGCuUGCCGC- -5'
27950 5' -53.8 NC_005886.2 + 35631 0.67 0.678024
Target:  5'- cGCCgc--GUGCGCUaUGCGGcGCGGCGa -3'
miRNA:   3'- -CGGacacUACGUGAaGCGCU-UGCCGC- -5'
27950 5' -53.8 NC_005886.2 + 152 0.67 0.678024
Target:  5'- uGUCgGUGAUGa--UUCGCGAACauuGGCGc -3'
miRNA:   3'- -CGGaCACUACgugAAGCGCUUG---CCGC- -5'
27950 5' -53.8 NC_005886.2 + 22012 0.68 0.633319
Target:  5'- cGUCUGaUGGacaaguUGCGCacgCGUGAACGGCu -3'
miRNA:   3'- -CGGAC-ACU------ACGUGaa-GCGCUUGCCGc -5'
27950 5' -53.8 NC_005886.2 + 19181 0.68 0.633319
Target:  5'- gGCCgcuucgaUGAUGCugagacaUUCGCGAugcaGCGGCGa -3'
miRNA:   3'- -CGGac-----ACUACGug-----AAGCGCU----UGCCGC- -5'
27950 5' -53.8 NC_005886.2 + 9678 0.69 0.588588
Target:  5'- cCCUaagaGUGGUGCACgcgguaUCGCGcAAUGGCu -3'
miRNA:   3'- cGGA----CACUACGUGa-----AGCGC-UUGCCGc -5'
27950 5' -53.8 NC_005886.2 + 35237 0.7 0.501453
Target:  5'- gGCgUGUGGUucgaacGUACacgcguugaguUUCGCGGGCGGCGu -3'
miRNA:   3'- -CGgACACUA------CGUG-----------AAGCGCUUGCCGC- -5'
27950 5' -53.8 NC_005886.2 + 39739 0.72 0.408045
Target:  5'- uGCCUGcgccUGAUGCGCgUgGCGGagcaaacgaaguugACGGCGa -3'
miRNA:   3'- -CGGAC----ACUACGUGaAgCGCU--------------UGCCGC- -5'
27950 5' -53.8 NC_005886.2 + 42772 1.12 0.000756
Target:  5'- cGCCUGUGAUGCACUUCGCGAACGGCGa -3'
miRNA:   3'- -CGGACACUACGUGAAGCGCUUGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.