Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27951 | 3' | -53.2 | NC_005886.2 | + | 14133 | 0.66 | 0.78722 |
Target: 5'- aACGuuuCAGCaaaCAAcUGaACCCGCCUGACg -3' miRNA: 3'- -UGCuu-GUUGg--GUU-AC-UGGGCGGGUUG- -5' |
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27951 | 3' | -53.2 | NC_005886.2 | + | 33045 | 0.67 | 0.717053 |
Target: 5'- aACGGAuCAACUCGAUgaguucugcgucaucGACCgGCCCAu- -3' miRNA: 3'- -UGCUU-GUUGGGUUA---------------CUGGgCGGGUug -5' |
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27951 | 3' | -53.2 | NC_005886.2 | + | 12114 | 0.67 | 0.734557 |
Target: 5'- cGCGGAUGACuCCGAUccggucGACgCGCCgAGCa -3' miRNA: 3'- -UGCUUGUUG-GGUUA------CUGgGCGGgUUG- -5' |
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27951 | 3' | -53.2 | NC_005886.2 | + | 36515 | 0.68 | 0.645255 |
Target: 5'- uCGAACGACCCGuc--CCCGCCgcuugcgguaaCAACg -3' miRNA: 3'- uGCUUGUUGGGUuacuGGGCGG-----------GUUG- -5' |
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27951 | 3' | -53.2 | NC_005886.2 | + | 24447 | 0.68 | 0.656585 |
Target: 5'- cGCGAGCGcgccGgCCAGUGACgCCGCgCAc- -3' miRNA: 3'- -UGCUUGU----UgGGUUACUG-GGCGgGUug -5' |
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27951 | 3' | -53.2 | NC_005886.2 | + | 24186 | 0.7 | 0.511191 |
Target: 5'- gACGAACuggaucgaGACCCGGccACCaCGCCCGAUg -3' miRNA: 3'- -UGCUUG--------UUGGGUUacUGG-GCGGGUUG- -5' |
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27951 | 3' | -53.2 | NC_005886.2 | + | 26127 | 0.71 | 0.49938 |
Target: 5'- uGCGGauacgucugcuacGCAAUCCGGUGACaucaCGCCCGcaGCg -3' miRNA: 3'- -UGCU-------------UGUUGGGUUACUGg---GCGGGU--UG- -5' |
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27951 | 3' | -53.2 | NC_005886.2 | + | 42150 | 0.74 | 0.328592 |
Target: 5'- cGCGGACAACCCGAUauaagcGACCCaacgguGCgCGACg -3' miRNA: 3'- -UGCUUGUUGGGUUA------CUGGG------CGgGUUG- -5' |
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27951 | 3' | -53.2 | NC_005886.2 | + | 26795 | 0.75 | 0.281852 |
Target: 5'- cGCGAAgcCGGCCgUAAUGugCCGUCCAACc -3' miRNA: 3'- -UGCUU--GUUGG-GUUACugGGCGGGUUG- -5' |
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27951 | 3' | -53.2 | NC_005886.2 | + | 43597 | 1.09 | 0.001366 |
Target: 5'- aACGAACAACCCAAUGACCCGCCCAACc -3' miRNA: 3'- -UGCUUGUUGGGUUACUGGGCGGGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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