Results 1 - 20 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27952 | 3' | -52.3 | NC_005886.2 | + | 39016 | 0.66 | 0.795909 |
Target: 5'- cGCUGCAUcCCCugucgaGCAgcCCGCAgCa -3' miRNA: 3'- cCGACGUAaGGGuuaa--CGU--GGCGUgG- -5' |
|||||||
27952 | 3' | -52.3 | NC_005886.2 | + | 17489 | 0.66 | 0.80587 |
Target: 5'- uGCUGCA--CCCGgcgucacggAUUGCAaCGUGCCa -3' miRNA: 3'- cCGACGUaaGGGU---------UAACGUgGCGUGG- -5' |
|||||||
27952 | 3' | -52.3 | NC_005886.2 | + | 44052 | 0.66 | 0.80587 |
Target: 5'- cGGCcgGCGUUCCgCAgcaaGUUGCAaCGCAg- -3' miRNA: 3'- -CCGa-CGUAAGG-GU----UAACGUgGCGUgg -5' |
|||||||
27952 | 3' | -52.3 | NC_005886.2 | + | 6461 | 0.66 | 0.815634 |
Target: 5'- -aUUGCAUUUCagcgcGUUGCGCuCGCAUCg -3' miRNA: 3'- ccGACGUAAGGgu---UAACGUG-GCGUGG- -5' |
|||||||
27952 | 3' | -52.3 | NC_005886.2 | + | 42043 | 0.66 | 0.815634 |
Target: 5'- cGGCUGUcgUCgCGAUguUGCAa-GCACg -3' miRNA: 3'- -CCGACGuaAGgGUUA--ACGUggCGUGg -5' |
|||||||
27952 | 3' | -52.3 | NC_005886.2 | + | 22891 | 0.66 | 0.825192 |
Target: 5'- gGGCgauaGCGUg-CCGGUgcuCACCGCGCUg -3' miRNA: 3'- -CCGa---CGUAagGGUUAac-GUGGCGUGG- -5' |
|||||||
27952 | 3' | -52.3 | NC_005886.2 | + | 34827 | 0.66 | 0.819483 |
Target: 5'- cGCUGCGUUcggauaCCCAucugauugguccgauAUUGaacguGCUGCACCg -3' miRNA: 3'- cCGACGUAA------GGGU---------------UAACg----UGGCGUGG- -5' |
|||||||
27952 | 3' | -52.3 | NC_005886.2 | + | 38598 | 0.67 | 0.743601 |
Target: 5'- uGCUugGUGUUgCCGGccGCGCCGCACUu -3' miRNA: 3'- cCGA--CGUAAgGGUUaaCGUGGCGUGG- -5' |
|||||||
27952 | 3' | -52.3 | NC_005886.2 | + | 24153 | 0.67 | 0.785766 |
Target: 5'- cGCUugcGCGUUCuCCAAgUGUGCCGCuuCg -3' miRNA: 3'- cCGA---CGUAAG-GGUUaACGUGGCGugG- -5' |
|||||||
27952 | 3' | -52.3 | NC_005886.2 | + | 3634 | 0.67 | 0.785766 |
Target: 5'- cGGUUcGC---CCCAAUUGCaguGCgGCACCc -3' miRNA: 3'- -CCGA-CGuaaGGGUUAACG---UGgCGUGG- -5' |
|||||||
27952 | 3' | -52.3 | NC_005886.2 | + | 35448 | 0.67 | 0.77545 |
Target: 5'- -aCUGCGcgCCC-GUUGCACCcggcGCGCUg -3' miRNA: 3'- ccGACGUaaGGGuUAACGUGG----CGUGG- -5' |
|||||||
27952 | 3' | -52.3 | NC_005886.2 | + | 10197 | 0.67 | 0.764976 |
Target: 5'- cGGggGCAaugaaugCCCAuAUUGCAgCCGCugCa -3' miRNA: 3'- -CCgaCGUaa-----GGGU-UAACGU-GGCGugG- -5' |
|||||||
27952 | 3' | -52.3 | NC_005886.2 | + | 41112 | 0.67 | 0.75862 |
Target: 5'- cGCUGCAcaacuugcuuuuguuUUCCCGAU--CACCGcCACg -3' miRNA: 3'- cCGACGU---------------AAGGGUUAacGUGGC-GUGg -5' |
|||||||
27952 | 3' | -52.3 | NC_005886.2 | + | 40331 | 0.67 | 0.743601 |
Target: 5'- uGGCgUGCGUuauagUCgCCAGU--CGCCGCGCUg -3' miRNA: 3'- -CCG-ACGUA-----AG-GGUUAacGUGGCGUGG- -5' |
|||||||
27952 | 3' | -52.3 | NC_005886.2 | + | 21204 | 0.68 | 0.688267 |
Target: 5'- uGCUGUuuGUUCgCGA--GCACCuGCGCCg -3' miRNA: 3'- cCGACG--UAAGgGUUaaCGUGG-CGUGG- -5' |
|||||||
27952 | 3' | -52.3 | NC_005886.2 | + | 30056 | 0.69 | 0.662233 |
Target: 5'- cGCUGUcacgUCCgGAUcaugucggagaucgUGCGCCGCGCg -3' miRNA: 3'- cCGACGua--AGGgUUA--------------ACGUGGCGUGg -5' |
|||||||
27952 | 3' | -52.3 | NC_005886.2 | + | 44814 | 0.7 | 0.597318 |
Target: 5'- cGGCaagucuUGCAUcuUCaUCGAgUGCACUGCACCc -3' miRNA: 3'- -CCG------ACGUA--AG-GGUUaACGUGGCGUGG- -5' |
|||||||
27952 | 3' | -52.3 | NC_005886.2 | + | 25892 | 0.71 | 0.540031 |
Target: 5'- gGGCUGguUUCgCA--UGCACCagauucaccaaacGCGCCg -3' miRNA: 3'- -CCGACguAAGgGUuaACGUGG-------------CGUGG- -5' |
|||||||
27952 | 3' | -52.3 | NC_005886.2 | + | 38917 | 0.72 | 0.497503 |
Target: 5'- cGCUGCcgUCgUCGAUcgGCGCUGCugCg -3' miRNA: 3'- cCGACGuaAG-GGUUAa-CGUGGCGugG- -5' |
|||||||
27952 | 3' | -52.3 | NC_005886.2 | + | 25764 | 0.72 | 0.486836 |
Target: 5'- uGGCUGCGUUCaacgggugaCGAUcacGCAUCGCgGCCg -3' miRNA: 3'- -CCGACGUAAGg--------GUUAa--CGUGGCG-UGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home