Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27953 | 5' | -62.5 | NC_005886.2 | + | 35611 | 0.66 | 0.284335 |
Target: 5'- gGCCCAUGCgUccaaguauucGCCGcGUGCGCUa--- -3' miRNA: 3'- gCGGGUACGgA----------CGGC-CACGCGGguac -5' |
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27953 | 5' | -62.5 | NC_005886.2 | + | 1075 | 0.66 | 0.313297 |
Target: 5'- aCGCCCAUGCagGCCGuccacuuacCGCCCGUa -3' miRNA: 3'- -GCGGGUACGgaCGGCcac------GCGGGUAc -5' |
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27953 | 5' | -62.5 | NC_005886.2 | + | 32090 | 0.69 | 0.18162 |
Target: 5'- uCGCCCGUGCUgcgaaucuagaUGCCgacguucgcuacaucGGUGCGCCgAa- -3' miRNA: 3'- -GCGGGUACGG-----------ACGG---------------CCACGCGGgUac -5' |
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27953 | 5' | -62.5 | NC_005886.2 | + | 36428 | 0.7 | 0.170477 |
Target: 5'- cCGCCCG-GCCgccGCCGaUGCcGCCCGUa -3' miRNA: 3'- -GCGGGUaCGGa--CGGCcACG-CGGGUAc -5' |
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27953 | 5' | -62.5 | NC_005886.2 | + | 16184 | 0.7 | 0.164262 |
Target: 5'- gCGCCCuuguauuguaccGCCUGCCGGguuacGCGCCgGUc -3' miRNA: 3'- -GCGGGua----------CGGACGGCCa----CGCGGgUAc -5' |
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27953 | 5' | -62.5 | NC_005886.2 | + | 36240 | 0.71 | 0.12689 |
Target: 5'- cCGCCCGUGCC-GCCGcGUGggaaaaauuCGaCCCGUGc -3' miRNA: 3'- -GCGGGUACGGaCGGC-CAC---------GC-GGGUAC- -5' |
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27953 | 5' | -62.5 | NC_005886.2 | + | 36348 | 0.74 | 0.077211 |
Target: 5'- cCGCCgAUGCC-GCCcGUGcCGCCCGUGc -3' miRNA: 3'- -GCGGgUACGGaCGGcCAC-GCGGGUAC- -5' |
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27953 | 5' | -62.5 | NC_005886.2 | + | 36396 | 0.74 | 0.077211 |
Target: 5'- cCGCCCGUGCC-GCCcGUGCcGCCgAUGc -3' miRNA: 3'- -GCGGGUACGGaCGGcCACG-CGGgUAC- -5' |
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27953 | 5' | -62.5 | NC_005886.2 | + | 36282 | 0.8 | 0.026234 |
Target: 5'- cCGCCCGUGCCgccGCCGaUGcCGCCCGUGc -3' miRNA: 3'- -GCGGGUACGGa--CGGCcAC-GCGGGUAC- -5' |
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27953 | 5' | -62.5 | NC_005886.2 | + | 36312 | 0.8 | 0.026234 |
Target: 5'- cCGCCCGUGCCgccGCCGaUGcCGCCCGUGc -3' miRNA: 3'- -GCGGGUACGGa--CGGCcAC-GCGGGUAC- -5' |
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27953 | 5' | -62.5 | NC_005886.2 | + | 43913 | 1.07 | 0.000218 |
Target: 5'- gCGCCCAUGCCUGCCGGUGCGCCCAUGc -3' miRNA: 3'- -GCGGGUACGGACGGCCACGCGGGUAC- -5' |
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27953 | 5' | -62.5 | NC_005886.2 | + | 43949 | 1.07 | 0.000218 |
Target: 5'- gCGCCCAUGCCUGCCGGUGCGCCCAUGc -3' miRNA: 3'- -GCGGGUACGGACGGCCACGCGGGUAC- -5' |
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27953 | 5' | -62.5 | NC_005886.2 | + | 43985 | 1.07 | 0.000218 |
Target: 5'- gCGCCCAUGCCUGCCGGUGCGCCCAUGc -3' miRNA: 3'- -GCGGGUACGGACGGCCACGCGGGUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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