miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27954 3' -54.4 NC_005886.2 + 32678 0.66 0.748711
Target:  5'- aCCGGuucGGCGGUGCaGCCggUUGCGUcGCu -3'
miRNA:   3'- gGGCC---UCGUUAUGgUGG--GACGCAaCG- -5'
27954 3' -54.4 NC_005886.2 + 43955 0.66 0.727474
Target:  5'- gCCGGuGCGcccAUGCCugCCggUGCGcccaUGCc -3'
miRNA:   3'- gGGCCuCGU---UAUGGugGG--ACGCa---ACG- -5'
27954 3' -54.4 NC_005886.2 + 43919 0.66 0.727474
Target:  5'- gCCGGuGCGcccAUGCCugCCggUGCGcccaUGCc -3'
miRNA:   3'- gGGCCuCGU---UAUGGugGG--ACGCa---ACG- -5'
27954 3' -54.4 NC_005886.2 + 10248 0.66 0.705846
Target:  5'- cCCCGuGAuuGCAGUACCGgCCUuaaucGCuUUGCu -3'
miRNA:   3'- -GGGC-CU--CGUUAUGGUgGGA-----CGcAACG- -5'
27954 3' -54.4 NC_005886.2 + 17477 0.66 0.704757
Target:  5'- aCCGcccGGCAGUGCugCACCCgGCGUcacggauUGCa -3'
miRNA:   3'- gGGCc--UCGUUAUG--GUGGGaCGCA-------ACG- -5'
27954 3' -54.4 NC_005886.2 + 19870 0.67 0.694916
Target:  5'- gCC-GAGCGccugcAUG-CGCCCUGCGUUGa -3'
miRNA:   3'- gGGcCUCGU-----UAUgGUGGGACGCAACg -5'
27954 3' -54.4 NC_005886.2 + 44218 0.67 0.694916
Target:  5'- gUUGGAGCGuguagccgGCCGCUuuCUGCGUcgGCa -3'
miRNA:   3'- gGGCCUCGUua------UGGUGG--GACGCAa-CG- -5'
27954 3' -54.4 NC_005886.2 + 14717 0.68 0.595079
Target:  5'- aCCGGGGCuuaACCugCUUGCaaugGCg -3'
miRNA:   3'- gGGCCUCGuuaUGGugGGACGcaa-CG- -5'
27954 3' -54.4 NC_005886.2 + 26924 0.69 0.572994
Target:  5'- gCCGGucgcGUAGUGCCGCCCggGCGc--- -3'
miRNA:   3'- gGGCCu---CGUUAUGGUGGGa-CGCaacg -5'
27954 3' -54.4 NC_005886.2 + 44420 0.69 0.52948
Target:  5'- gCCCGGuucGCA--GCCGCUCaaCGUUGCa -3'
miRNA:   3'- -GGGCCu--CGUuaUGGUGGGacGCAACG- -5'
27954 3' -54.4 NC_005886.2 + 43992 0.7 0.508174
Target:  5'- gCCCGGuGCGcccAUGCCugCCggUGCGcccaUGCc -3'
miRNA:   3'- -GGGCCuCGU---UAUGGugGG--ACGCa---ACG- -5'
27954 3' -54.4 NC_005886.2 + 39472 0.76 0.212317
Target:  5'- aCCCGGcccauAGCucaAUCACCCUGCGUaGCu -3'
miRNA:   3'- -GGGCC-----UCGuuaUGGUGGGACGCAaCG- -5'
27954 3' -54.4 NC_005886.2 + 44148 1.14 0.000453
Target:  5'- gCCCGGAGCAAUACCACCCUGCGUUGCa -3'
miRNA:   3'- -GGGCCUCGUUAUGGUGGGACGCAACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.