Results 1 - 20 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27954 | 5' | -58.6 | NC_005886.2 | + | 44114 | 1.09 | 0.000354 |
Target: 5'- uGCGGAACGCCGGCCGCUUGCAUCGCAc -3' miRNA: 3'- -CGCCUUGCGGCCGGCGAACGUAGCGU- -5' |
|||||||
27954 | 5' | -58.6 | NC_005886.2 | + | 44217 | 0.78 | 0.079319 |
Target: 5'- uUGGAGCguguaGCCGGCCGCUuucUGCGUCgGCAc -3' miRNA: 3'- cGCCUUG-----CGGCCGGCGA---ACGUAG-CGU- -5' |
|||||||
27954 | 5' | -58.6 | NC_005886.2 | + | 19569 | 0.75 | 0.135088 |
Target: 5'- cGuuGAACGuCCGGCCGCUgGCGUUGUg -3' miRNA: 3'- -CgcCUUGC-GGCCGGCGAaCGUAGCGu -5' |
|||||||
27954 | 5' | -58.6 | NC_005886.2 | + | 19280 | 0.74 | 0.142719 |
Target: 5'- aCGGuuUGCCGucGCCGC-UGCAUCGCGa -3' miRNA: 3'- cGCCuuGCGGC--CGGCGaACGUAGCGU- -5' |
|||||||
27954 | 5' | -58.6 | NC_005886.2 | + | 34232 | 0.71 | 0.249437 |
Target: 5'- gGCGGAACuuGCCGGCCaGUggacCAUUGCAc -3' miRNA: 3'- -CGCCUUG--CGGCCGG-CGaac-GUAGCGU- -5' |
|||||||
27954 | 5' | -58.6 | NC_005886.2 | + | 24445 | 0.71 | 0.249437 |
Target: 5'- aGCGcGAgcGCGCCGGCCaGUgacGCcgCGCAc -3' miRNA: 3'- -CGC-CU--UGCGGCCGG-CGaa-CGuaGCGU- -5' |
|||||||
27954 | 5' | -58.6 | NC_005886.2 | + | 16241 | 0.7 | 0.276058 |
Target: 5'- aCGGGcgcuucaacaucGCGCCGGCCG-UUGCGuUCGUg -3' miRNA: 3'- cGCCU------------UGCGGCCGGCgAACGU-AGCGu -5' |
|||||||
27954 | 5' | -58.6 | NC_005886.2 | + | 29311 | 0.7 | 0.29748 |
Target: 5'- cGCGacaauAUGCCGGCCGCU-GCAaaCGCGc -3' miRNA: 3'- -CGCcu---UGCGGCCGGCGAaCGUa-GCGU- -5' |
|||||||
27954 | 5' | -58.6 | NC_005886.2 | + | 9447 | 0.69 | 0.312465 |
Target: 5'- uGCGGcgucgacguGGCccgaaucgcucgGCCGGCCGCUUGCucuUUGCc -3' miRNA: 3'- -CGCC---------UUG------------CGGCCGGCGAACGu--AGCGu -5' |
|||||||
27954 | 5' | -58.6 | NC_005886.2 | + | 41959 | 0.69 | 0.328015 |
Target: 5'- cGCGGGggcgGCGuCCGG-CGCagGCAUUGCGa -3' miRNA: 3'- -CGCCU----UGC-GGCCgGCGaaCGUAGCGU- -5' |
|||||||
27954 | 5' | -58.6 | NC_005886.2 | + | 31109 | 0.69 | 0.334394 |
Target: 5'- uCGGAAgcuUGCCGGCCGCaaaggguucaaGCGUgCGCAa -3' miRNA: 3'- cGCCUU---GCGGCCGGCGaa---------CGUA-GCGU- -5' |
|||||||
27954 | 5' | -58.6 | NC_005886.2 | + | 21287 | 0.69 | 0.344131 |
Target: 5'- uGCGGuACGCuCGGCCGCguagacGCGUUcCAu -3' miRNA: 3'- -CGCCuUGCG-GCCGGCGaa----CGUAGcGU- -5' |
|||||||
27954 | 5' | -58.6 | NC_005886.2 | + | 17948 | 0.68 | 0.369355 |
Target: 5'- -aGGAACGCCGGCUuaucccggacgGCUUGUccUUGCc -3' miRNA: 3'- cgCCUUGCGGCCGG-----------CGAACGu-AGCGu -5' |
|||||||
27954 | 5' | -58.6 | NC_005886.2 | + | 18247 | 0.68 | 0.395817 |
Target: 5'- cGCGGcGCGacgaUGGCUGaacagGCAUCGCGg -3' miRNA: 3'- -CGCCuUGCg---GCCGGCgaa--CGUAGCGU- -5' |
|||||||
27954 | 5' | -58.6 | NC_005886.2 | + | 35525 | 0.67 | 0.414124 |
Target: 5'- uCGGGcaACaGUCGGCCGUUcaUGCugAUCGCAa -3' miRNA: 3'- cGCCU--UG-CGGCCGGCGA--ACG--UAGCGU- -5' |
|||||||
27954 | 5' | -58.6 | NC_005886.2 | + | 41968 | 0.67 | 0.432943 |
Target: 5'- cGCuGAACGaaguguUCGcGCCGCUcgGCAUCGUAg -3' miRNA: 3'- -CGcCUUGC------GGC-CGGCGAa-CGUAGCGU- -5' |
|||||||
27954 | 5' | -58.6 | NC_005886.2 | + | 38595 | 0.67 | 0.442537 |
Target: 5'- uUGGuguUGCCGGCCGCgccGCAcUUGCu -3' miRNA: 3'- cGCCuu-GCGGCCGGCGaa-CGU-AGCGu -5' |
|||||||
27954 | 5' | -58.6 | NC_005886.2 | + | 35600 | 0.67 | 0.442537 |
Target: 5'- gGCGGGAUaCCGGCC-CaUGCGUC-CAa -3' miRNA: 3'- -CGCCUUGcGGCCGGcGaACGUAGcGU- -5' |
|||||||
27954 | 5' | -58.6 | NC_005886.2 | + | 32435 | 0.67 | 0.442537 |
Target: 5'- cGCGcGuguUGUCGGCCGCUU-CuUCGCAa -3' miRNA: 3'- -CGC-Cuu-GCGGCCGGCGAAcGuAGCGU- -5' |
|||||||
27954 | 5' | -58.6 | NC_005886.2 | + | 24016 | 0.66 | 0.462078 |
Target: 5'- cGCGGAuCGUCGcGCCaa-UGCAUCGUu -3' miRNA: 3'- -CGCCUuGCGGC-CGGcgaACGUAGCGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home