miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27955 5' -55.3 NC_005886.2 + 25100 0.71 0.419905
Target:  5'- cGUGCAUCgCGugaacggcAUCGAC-GUGCGCAUCc -3'
miRNA:   3'- -CGCGUAG-GC--------UAGCUGaCGCGCGUAGc -5'
27955 5' -55.3 NC_005886.2 + 43106 0.66 0.695277
Target:  5'- aGCGauCGUCCac-CGGCagggcuuaagguUGCGCGCGUCGa -3'
miRNA:   3'- -CGC--GUAGGcuaGCUG------------ACGCGCGUAGC- -5'
27955 5' -55.3 NC_005886.2 + 45928 0.66 0.673433
Target:  5'- cGCGCGaucugcgCCGAUgCGGCUauCGCGUAUCu -3'
miRNA:   3'- -CGCGUa------GGCUA-GCUGAc-GCGCGUAGc -5'
27955 5' -55.3 NC_005886.2 + 46966 0.67 0.651431
Target:  5'- uCGCAUugCCGAUCuGGCcgGCGCGCuaaAUCu -3'
miRNA:   3'- cGCGUA--GGCUAG-CUGa-CGCGCG---UAGc -5'
27955 5' -55.3 NC_005886.2 + 34974 0.67 0.651431
Target:  5'- aCGCuaacgAUCUGAUCGACUGgaauagcacUGCGCGUUu -3'
miRNA:   3'- cGCG-----UAGGCUAGCUGAC---------GCGCGUAGc -5'
27955 5' -55.3 NC_005886.2 + 13080 0.67 0.651431
Target:  5'- uGCGCAgaauuccaaCCGAgCaAUUGCGCGaCAUCGa -3'
miRNA:   3'- -CGCGUa--------GGCUaGcUGACGCGC-GUAGC- -5'
27955 5' -55.3 NC_005886.2 + 15748 0.67 0.650328
Target:  5'- uGCuGCAUCCGGgucuucuUCGGC-GCGCuccGCAUCc -3'
miRNA:   3'- -CG-CGUAGGCU-------AGCUGaCGCG---CGUAGc -5'
27955 5' -55.3 NC_005886.2 + 23873 0.67 0.640398
Target:  5'- --aCAUCCGcAUCGAUcGCG-GCAUCGa -3'
miRNA:   3'- cgcGUAGGC-UAGCUGaCGCgCGUAGC- -5'
27955 5' -55.3 NC_005886.2 + 15407 0.67 0.637086
Target:  5'- gGCGCAagcgugCUGAUCGACaccuugucaaucguUGCGCuCGUCa -3'
miRNA:   3'- -CGCGUa-----GGCUAGCUG--------------ACGCGcGUAGc -5'
27955 5' -55.3 NC_005886.2 + 31088 0.7 0.468862
Target:  5'- aGCGCAUgagaCCGAUCGGC-GuCGCGUA-CGa -3'
miRNA:   3'- -CGCGUA----GGCUAGCUGaC-GCGCGUaGC- -5'
27955 5' -55.3 NC_005886.2 + 29572 0.69 0.520581
Target:  5'- -aGCAUCUGGcCGGCUuuggugaGCGCAUCGg -3'
miRNA:   3'- cgCGUAGGCUaGCUGAcg-----CGCGUAGC- -5'
27955 5' -55.3 NC_005886.2 + 29833 0.68 0.541897
Target:  5'- cGCGCuugCUcGUCGuuuucccaUGCGCGCAUCGc -3'
miRNA:   3'- -CGCGua-GGcUAGCug------ACGCGCGUAGC- -5'
27955 5' -55.3 NC_005886.2 + 9209 0.67 0.59629
Target:  5'- -aGCGUCCG-UCGcCUGUGUGUggAUCGu -3'
miRNA:   3'- cgCGUAGGCuAGCuGACGCGCG--UAGC- -5'
27955 5' -55.3 NC_005886.2 + 24597 0.67 0.607294
Target:  5'- uGCGCGUUUuacuUCGAUgGCGCGCGgaUCGa -3'
miRNA:   3'- -CGCGUAGGcu--AGCUGaCGCGCGU--AGC- -5'
27955 5' -55.3 NC_005886.2 + 10481 0.67 0.61832
Target:  5'- cGCuuCAUUCGAUCGAUauguucgucaaGUGCGCGUCGa -3'
miRNA:   3'- -CGc-GUAGGCUAGCUGa----------CGCGCGUAGC- -5'
27955 5' -55.3 NC_005886.2 + 15112 0.66 0.706113
Target:  5'- cGCGCGaucauucaUCCGAccgaCGAUUGCcGCGCAg-- -3'
miRNA:   3'- -CGCGU--------AGGCUa---GCUGACG-CGCGUagc -5'
27955 5' -55.3 NC_005886.2 + 38992 0.79 0.131589
Target:  5'- cGCaGCAgcgCCGAUCGACgacgaGCaGCGCAUCGa -3'
miRNA:   3'- -CG-CGUa--GGCUAGCUGa----CG-CGCGUAGC- -5'
27955 5' -55.3 NC_005886.2 + 32550 0.71 0.392057
Target:  5'- cGCGCGUUCGuuAUCGACUGUugcgGCGC-UUGa -3'
miRNA:   3'- -CGCGUAGGC--UAGCUGACG----CGCGuAGC- -5'
27955 5' -55.3 NC_005886.2 + 39309 0.71 0.401206
Target:  5'- gGCGCAUaUCGAcgGACUGCGCGCuacguucucAUCGc -3'
miRNA:   3'- -CGCGUA-GGCUagCUGACGCGCG---------UAGC- -5'
27955 5' -55.3 NC_005886.2 + 704 0.71 0.401206
Target:  5'- aCGCAUUCGAUCGACgcaaagaaacuUGCGCaGguUCa -3'
miRNA:   3'- cGCGUAGGCUAGCUG-----------ACGCG-CguAGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.