miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27955 5' -55.3 NC_005886.2 + 9209 0.67 0.59629
Target:  5'- -aGCGUCCG-UCGcCUGUGUGUggAUCGu -3'
miRNA:   3'- cgCGUAGGCuAGCuGACGCGCG--UAGC- -5'
27955 5' -55.3 NC_005886.2 + 10456 0.67 0.59629
Target:  5'- uCGUAUUCGAUaCGGUUGCGCGCGa-- -3'
miRNA:   3'- cGCGUAGGCUA-GCUGACGCGCGUagc -5'
27955 5' -55.3 NC_005886.2 + 5431 0.68 0.563495
Target:  5'- cGUGCAuUUCGAUCGAcCUGCGCaagugGCgAUCa -3'
miRNA:   3'- -CGCGU-AGGCUAGCU-GACGCG-----CG-UAGc -5'
27955 5' -55.3 NC_005886.2 + 29833 0.68 0.541897
Target:  5'- cGCGCuugCUcGUCGuuuucccaUGCGCGCAUCGc -3'
miRNA:   3'- -CGCGua-GGcUAGCug------ACGCGCGUAGC- -5'
27955 5' -55.3 NC_005886.2 + 29572 0.69 0.520581
Target:  5'- -aGCAUCUGGcCGGCUuuggugaGCGCAUCGg -3'
miRNA:   3'- cgCGUAGGCUaGCUGAcg-----CGCGUAGC- -5'
27955 5' -55.3 NC_005886.2 + 42907 0.69 0.510045
Target:  5'- uGCGCAacaauUCCGuGUCG---GCGCGUAUCGg -3'
miRNA:   3'- -CGCGU-----AGGC-UAGCugaCGCGCGUAGC- -5'
27955 5' -55.3 NC_005886.2 + 23645 0.69 0.4996
Target:  5'- gGCGUAUCCGAagaUCGACgcgauUGCGUuUCGg -3'
miRNA:   3'- -CGCGUAGGCU---AGCUGac---GCGCGuAGC- -5'
27955 5' -55.3 NC_005886.2 + 31088 0.7 0.468862
Target:  5'- aGCGCAUgagaCCGAUCGGC-GuCGCGUA-CGa -3'
miRNA:   3'- -CGCGUA----GGCUAGCUGaC-GCGCGUaGC- -5'
27955 5' -55.3 NC_005886.2 + 28521 0.7 0.439122
Target:  5'- uGCGCAUCau-UCGcUUGCGCagGCAUCGa -3'
miRNA:   3'- -CGCGUAGgcuAGCuGACGCG--CGUAGC- -5'
27955 5' -55.3 NC_005886.2 + 25100 0.71 0.419905
Target:  5'- cGUGCAUCgCGugaacggcAUCGAC-GUGCGCAUCc -3'
miRNA:   3'- -CGCGUAG-GC--------UAGCUGaCGCGCGUAGc -5'
27955 5' -55.3 NC_005886.2 + 704 0.71 0.401206
Target:  5'- aCGCAUUCGAUCGACgcaaagaaacuUGCGCaGguUCa -3'
miRNA:   3'- cGCGUAGGCUAGCUG-----------ACGCG-CguAGc -5'
27955 5' -55.3 NC_005886.2 + 39309 0.71 0.401206
Target:  5'- gGCGCAUaUCGAcgGACUGCGCGCuacguucucAUCGc -3'
miRNA:   3'- -CGCGUA-GGCUagCUGACGCGCG---------UAGC- -5'
27955 5' -55.3 NC_005886.2 + 32550 0.71 0.392057
Target:  5'- cGCGCGUUCGuuAUCGACUGUugcgGCGC-UUGa -3'
miRNA:   3'- -CGCGUAGGC--UAGCUGACG----CGCGuAGC- -5'
27955 5' -55.3 NC_005886.2 + 38992 0.79 0.131589
Target:  5'- cGCaGCAgcgCCGAUCGACgacgaGCaGCGCAUCGa -3'
miRNA:   3'- -CG-CGUa--GGCUAGCUGa----CG-CGCGUAGC- -5'
27955 5' -55.3 NC_005886.2 + 45002 1.11 0.000655
Target:  5'- uGCGCAUCCGAUCGACUGCGCGCAUCGa -3'
miRNA:   3'- -CGCGUAGGCUAGCUGACGCGCGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.