miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27956 3' -55.6 NC_005886.2 + 36355 0.66 0.682284
Target:  5'- gAUGC-CGCCGcCGAUGCcgCCCGUGcCGc -3'
miRNA:   3'- gUGCGuGCGGU-GCUACG--GGGUAUaGC- -5'
27956 3' -55.6 NC_005886.2 + 42922 0.66 0.682284
Target:  5'- gCAuCGCACGUU-CGAUGCgcaacaauUCCGUGUCGg -3'
miRNA:   3'- -GU-GCGUGCGGuGCUACG--------GGGUAUAGC- -5'
27956 3' -55.6 NC_005886.2 + 17364 0.66 0.671274
Target:  5'- aACGCGCGCCAa-AUGaCCCAaaugGUCa -3'
miRNA:   3'- gUGCGUGCGGUgcUACgGGGUa---UAGc -5'
27956 3' -55.6 NC_005886.2 + 40388 0.66 0.671274
Target:  5'- aACGCACGCCAacuUGCCgaagCCGUcaagaaAUCGa -3'
miRNA:   3'- gUGCGUGCGGUgcuACGG----GGUA------UAGC- -5'
27956 3' -55.6 NC_005886.2 + 23636 0.66 0.671274
Target:  5'- cCACGCACGCCuACGccuagGCCgUCGgaGUCGa -3'
miRNA:   3'- -GUGCGUGCGG-UGCua---CGG-GGUa-UAGC- -5'
27956 3' -55.6 NC_005886.2 + 8377 0.66 0.649152
Target:  5'- aGCGCACGCUgucgACGAguuucacgccUGCCCgAcugAUCGu -3'
miRNA:   3'- gUGCGUGCGG----UGCU----------ACGGGgUa--UAGC- -5'
27956 3' -55.6 NC_005886.2 + 11540 0.66 0.648044
Target:  5'- gACGCGCGCacugauugacaauCACG-UGCCCgAUuUCGa -3'
miRNA:   3'- gUGCGUGCG-------------GUGCuACGGGgUAuAGC- -5'
27956 3' -55.6 NC_005886.2 + 44759 0.67 0.615875
Target:  5'- aUACGCACGCC-CGgcGCaacuuCCAUgauGUCGa -3'
miRNA:   3'- -GUGCGUGCGGuGCuaCGg----GGUA---UAGC- -5'
27956 3' -55.6 NC_005886.2 + 27716 0.67 0.582726
Target:  5'- gGCGCAUcUUACGGUGCgCCCcgaGUGUCGc -3'
miRNA:   3'- gUGCGUGcGGUGCUACG-GGG---UAUAGC- -5'
27956 3' -55.6 NC_005886.2 + 25853 0.67 0.560821
Target:  5'- aCACGCG-GCCGCGAUGCgUgAUcGUCa -3'
miRNA:   3'- -GUGCGUgCGGUGCUACGgGgUA-UAGc -5'
27956 3' -55.6 NC_005886.2 + 26885 0.67 0.560821
Target:  5'- gACGaACGCCGCGAUcagGuCCCCAUGcuUCa -3'
miRNA:   3'- gUGCgUGCGGUGCUA---C-GGGGUAU--AGc -5'
27956 3' -55.6 NC_005886.2 + 18154 0.68 0.548868
Target:  5'- aACGUACcgauauGCCGCGAUGCCuguucagCCAUcGUCGc -3'
miRNA:   3'- gUGCGUG------CGGUGCUACGG-------GGUA-UAGC- -5'
27956 3' -55.6 NC_005886.2 + 31314 0.68 0.517767
Target:  5'- --aGUucggUGUgACGGUGCCCCAUAUCa -3'
miRNA:   3'- gugCGu---GCGgUGCUACGGGGUAUAGc -5'
27956 3' -55.6 NC_005886.2 + 24452 0.69 0.47609
Target:  5'- gCGCGCcggccagugACGCCGCGcaccAUGUcaaaCCCAUGUCGc -3'
miRNA:   3'- -GUGCG---------UGCGGUGC----UACG----GGGUAUAGC- -5'
27956 3' -55.6 NC_005886.2 + 23546 0.7 0.416916
Target:  5'- uCACGCACGCU-CGAUGaCCCCcgAa-- -3'
miRNA:   3'- -GUGCGUGCGGuGCUAC-GGGGuaUagc -5'
27956 3' -55.6 NC_005886.2 + 46063 0.7 0.407495
Target:  5'- cUACGCACGUCGCGAcauUCCCGUA-CGg -3'
miRNA:   3'- -GUGCGUGCGGUGCUac-GGGGUAUaGC- -5'
27956 3' -55.6 NC_005886.2 + 36913 0.71 0.37118
Target:  5'- aUACGUACGCCuuccCGAUGCCaag-GUCGa -3'
miRNA:   3'- -GUGCGUGCGGu---GCUACGGgguaUAGC- -5'
27956 3' -55.6 NC_005886.2 + 40207 0.72 0.320986
Target:  5'- aAUGCGCGUCGC-AUGCUCgAUGUCGa -3'
miRNA:   3'- gUGCGUGCGGUGcUACGGGgUAUAGC- -5'
27956 3' -55.6 NC_005886.2 + 14319 0.87 0.029373
Target:  5'- aCACGCACGUUGCGGUGCCCCAacUGUCu -3'
miRNA:   3'- -GUGCGUGCGGUGCUACGGGGU--AUAGc -5'
27956 3' -55.6 NC_005886.2 + 1459 1.09 0.00073
Target:  5'- cCACGCACGCCACGAUGCCCCAUAUCGg -3'
miRNA:   3'- -GUGCGUGCGGUGCUACGGGGUAUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.