miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27958 5' -51.3 NC_005886.2 + 16418 0.66 0.872573
Target:  5'- cGCCgu-UCGCGUCGUUcaGUUCagGGGCCGa -3'
miRNA:   3'- -CGGaacAGCGUAGCAA--CGAG--CUUGGU- -5'
27958 5' -51.3 NC_005886.2 + 35685 0.66 0.864278
Target:  5'- cGCCaaGUgCgauuuuuccgGCAUCGUUGaUCGAACCAu -3'
miRNA:   3'- -CGGaaCA-G----------CGUAGCAACgAGCUUGGU- -5'
27958 5' -51.3 NC_005886.2 + 11183 0.67 0.822897
Target:  5'- -aCUUGgagaacagauaaugC-CGUCGUUGCUCGAAUCAu -3'
miRNA:   3'- cgGAACa-------------GcGUAGCAACGAGCUUGGU- -5'
27958 5' -51.3 NC_005886.2 + 10454 0.68 0.779027
Target:  5'- -gCUUGUUGCcgCGUgacgaUGC-CGAGCCGc -3'
miRNA:   3'- cgGAACAGCGuaGCA-----ACGaGCUUGGU- -5'
27958 5' -51.3 NC_005886.2 + 38873 0.69 0.736361
Target:  5'- gGCCguccGUCGCGaCGUUcaucGCUCGcGCCAu -3'
miRNA:   3'- -CGGaa--CAGCGUaGCAA----CGAGCuUGGU- -5'
27958 5' -51.3 NC_005886.2 + 600 0.72 0.566689
Target:  5'- uCCUgcGUCGCAUaCGUUGCcUGAACCu -3'
miRNA:   3'- cGGAa-CAGCGUA-GCAACGaGCUUGGu -5'
27958 5' -51.3 NC_005886.2 + 12013 0.72 0.566689
Target:  5'- uGCCUUGUCGCGaaucugaaugcUCGgcGCgUCGA-CCGg -3'
miRNA:   3'- -CGGAACAGCGU-----------AGCaaCG-AGCUuGGU- -5'
27958 5' -51.3 NC_005886.2 + 21563 0.72 0.522173
Target:  5'- cCCUacUGgugCGCGcCGUUGCUCGAugCAc -3'
miRNA:   3'- cGGA--ACa--GCGUaGCAACGAGCUugGU- -5'
27958 5' -51.3 NC_005886.2 + 34009 0.74 0.417936
Target:  5'- cGCCgcaGUCGCAUCGaaacgucaagUGCUCGAAgCGa -3'
miRNA:   3'- -CGGaa-CAGCGUAGCa---------ACGAGCUUgGU- -5'
27958 5' -51.3 NC_005886.2 + 5323 1.11 0.001566
Target:  5'- uGCCUUGUCGCAUCGUUGCUCGAACCAu -3'
miRNA:   3'- -CGGAACAGCGUAGCAACGAGCUUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.