Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27959 | 3' | -54.2 | NC_005886.2 | + | 755 | 0.67 | 0.682047 |
Target: 5'- uGAUCGCGUCGGagcGGGAUACcCCGaCa -3' miRNA: 3'- uCUAGCGUAGCU---CCUUGUGuGGCgGg -5' |
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27959 | 3' | -54.2 | NC_005886.2 | + | 3916 | 0.66 | 0.767778 |
Target: 5'- cGAUCGCGguaUCGucGGGCGuuguacCAUUGCCCg -3' miRNA: 3'- uCUAGCGU---AGCucCUUGU------GUGGCGGG- -5' |
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27959 | 3' | -54.2 | NC_005886.2 | + | 6002 | 1.13 | 0.000626 |
Target: 5'- cAGAUCGCAUCGAGGAACACACCGCCCg -3' miRNA: 3'- -UCUAGCGUAGCUCCUUGUGUGGCGGG- -5' |
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27959 | 3' | -54.2 | NC_005886.2 | + | 14551 | 0.68 | 0.648771 |
Target: 5'- cGA-CGCGUaCGAGGcgaugAACACGCCGUUUg -3' miRNA: 3'- uCUaGCGUA-GCUCC-----UUGUGUGGCGGG- -5' |
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27959 | 3' | -54.2 | NC_005886.2 | + | 15056 | 0.67 | 0.702914 |
Target: 5'- uGAUCGCG-CGGGGAugcCGCGCgauggugCGCCg -3' miRNA: 3'- uCUAGCGUaGCUCCUu--GUGUG-------GCGGg -5' |
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27959 | 3' | -54.2 | NC_005886.2 | + | 15325 | 0.73 | 0.34407 |
Target: 5'- cGAUCGCAUCGAcaGGAGCGCccacagcauuugACCGUa- -3' miRNA: 3'- uCUAGCGUAGCU--CCUUGUG------------UGGCGgg -5' |
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27959 | 3' | -54.2 | NC_005886.2 | + | 15913 | 0.73 | 0.367224 |
Target: 5'- cAGGUCGaCAUCGAacgugccguugcGGAACACAcgucggagcgcgauCCGUCCg -3' miRNA: 3'- -UCUAGC-GUAGCU------------CCUUGUGU--------------GGCGGG- -5' |
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27959 | 3' | -54.2 | NC_005886.2 | + | 20605 | 0.66 | 0.713799 |
Target: 5'- cGGcgCgGCAuUCGAGGAuugaucuAUGC-CCGCCCg -3' miRNA: 3'- -UCuaG-CGU-AGCUCCU-------UGUGuGGCGGG- -5' |
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27959 | 3' | -54.2 | NC_005886.2 | + | 23256 | 0.69 | 0.571043 |
Target: 5'- ---cCGCGuaguUCGGGGAAacCAUGCCGUCCg -3' miRNA: 3'- ucuaGCGU----AGCUCCUU--GUGUGGCGGG- -5' |
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27959 | 3' | -54.2 | NC_005886.2 | + | 26823 | 0.69 | 0.59313 |
Target: 5'- uGAUCGCGgcguUCGucGAACGCAUcaCGCCa -3' miRNA: 3'- uCUAGCGU----AGCucCUUGUGUG--GCGGg -5' |
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27959 | 3' | -54.2 | NC_005886.2 | + | 32000 | 0.66 | 0.767778 |
Target: 5'- cGGAUCGCAaCGcGcGcauuacgcAAUACACCGCCg -3' miRNA: 3'- -UCUAGCGUaGCuC-C--------UUGUGUGGCGGg -5' |
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27959 | 3' | -54.2 | NC_005886.2 | + | 32659 | 0.67 | 0.68976 |
Target: 5'- cGGUUGCGUCGcucguuacggucacAGuGAACAcCGCCGCgCg -3' miRNA: 3'- uCUAGCGUAGC--------------UC-CUUGU-GUGGCGgG- -5' |
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27959 | 3' | -54.2 | NC_005886.2 | + | 33820 | 0.68 | 0.607563 |
Target: 5'- uAGAcgCGCAUCGuaacacccacgcacACAUACCGCCCg -3' miRNA: 3'- -UCUa-GCGUAGCuccu----------UGUGUGGCGGG- -5' |
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27959 | 3' | -54.2 | NC_005886.2 | + | 36572 | 0.68 | 0.614238 |
Target: 5'- cGGGUCGU-UCGAaggaaucGGAGCGCAUCGCg- -3' miRNA: 3'- -UCUAGCGuAGCU-------CCUUGUGUGGCGgg -5' |
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27959 | 3' | -54.2 | NC_005886.2 | + | 39662 | 0.66 | 0.767778 |
Target: 5'- cGGGuUCGCggCGAaaucaaacauuuGG-ACGgGCCGCCCg -3' miRNA: 3'- -UCU-AGCGuaGCU------------CCuUGUgUGGCGGG- -5' |
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27959 | 3' | -54.2 | NC_005886.2 | + | 40282 | 0.68 | 0.615351 |
Target: 5'- cGGUCGaCAUCGAGcaugcGACGCGCauuugugaaGCCCu -3' miRNA: 3'- uCUAGC-GUAGCUCc----UUGUGUGg--------CGGG- -5' |
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27959 | 3' | -54.2 | NC_005886.2 | + | 43135 | 0.75 | 0.281759 |
Target: 5'- uGcgCGCGUCGAcgaaGAGCGCGCCGCgCg -3' miRNA: 3'- uCuaGCGUAGCUc---CUUGUGUGGCGgG- -5' |
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27959 | 3' | -54.2 | NC_005886.2 | + | 45283 | 0.78 | 0.174571 |
Target: 5'- uGAUCGCAUCGGGGAugACGau-CCCg -3' miRNA: 3'- uCUAGCGUAGCUCCUugUGUggcGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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