miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2796 5' -52.9 NC_001491.2 + 90268 0.66 0.959956
Target:  5'- cCCGaUGCCGaggcuAGCUUGCGCGCGc- -3'
miRNA:   3'- cGGUcACGGUau---UUGGACGCGCGUuu -5'
2796 5' -52.9 NC_001491.2 + 6280 0.67 0.942993
Target:  5'- -aCGGUGCUGgcuAACCUGUGUGgGAAa -3'
miRNA:   3'- cgGUCACGGUau-UUGGACGCGCgUUU- -5'
2796 5' -52.9 NC_001491.2 + 121895 0.67 0.942993
Target:  5'- uUCAGUGCCcgcAGCgUgGCGCGCAGc -3'
miRNA:   3'- cGGUCACGGuauUUGgA-CGCGCGUUu -5'
2796 5' -52.9 NC_001491.2 + 5669 0.67 0.932983
Target:  5'- aGCCGGaGCCGgaaaacguGCCgGCGCGCc-- -3'
miRNA:   3'- -CGGUCaCGGUauu-----UGGaCGCGCGuuu -5'
2796 5' -52.9 NC_001491.2 + 140090 0.67 0.927588
Target:  5'- cGCCGG-GCCGcccgcggAGGCCUGgcCGCGCGu- -3'
miRNA:   3'- -CGGUCaCGGUa------UUUGGAC--GCGCGUuu -5'
2796 5' -52.9 NC_001491.2 + 124470 0.68 0.916014
Target:  5'- gGCCAGgcaGCCccgcAGCC-GCGCGCAc- -3'
miRNA:   3'- -CGGUCa--CGGuau-UUGGaCGCGCGUuu -5'
2796 5' -52.9 NC_001491.2 + 93168 0.68 0.889774
Target:  5'- uGCCAGUgguauacaaagGCCAUGAAUCUGCuuaCGCu-- -3'
miRNA:   3'- -CGGUCA-----------CGGUAUUUGGACGc--GCGuuu -5'
2796 5' -52.9 NC_001491.2 + 137696 0.69 0.870582
Target:  5'- cGgCGGcgGCCGUGGACCgagcgggcgcgggaGCGCGCGAGc -3'
miRNA:   3'- -CgGUCa-CGGUAUUUGGa-------------CGCGCGUUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.