miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27960 5' -63.3 NC_005886.2 + 35521 0.66 0.306878
Target:  5'- aGCgCGCCGggugcaaCGGGCGCGcAGUAUCGuGCGu -3'
miRNA:   3'- -CG-GCGGUg------GCUCGCGC-UCGUGGC-CGU- -5'
27960 5' -63.3 NC_005886.2 + 17555 0.66 0.306878
Target:  5'- uCCGUgaCGCCGGGUGC-AGCACUgccgGGCGg -3'
miRNA:   3'- cGGCG--GUGGCUCGCGcUCGUGG----CCGU- -5'
27960 5' -63.3 NC_005886.2 + 43831 0.66 0.306149
Target:  5'- aGCCGgCAggcaUGGGCGCaccggcaggcaugGGcGCACCGGCAg -3'
miRNA:   3'- -CGGCgGUg---GCUCGCG-------------CU-CGUGGCCGU- -5'
27960 5' -63.3 NC_005886.2 + 44202 0.66 0.292561
Target:  5'- gGCCGCuuuCugCGucGGCaCGAGUugCGGCGc -3'
miRNA:   3'- -CGGCG---GugGC--UCGcGCUCGugGCCGU- -5'
27960 5' -63.3 NC_005886.2 + 17660 0.66 0.285601
Target:  5'- uGCCGCCGucCCGAacgaugcguauuGCuucggguucGCGAGaauGCCGGCAa -3'
miRNA:   3'- -CGGCGGU--GGCU------------CG---------CGCUCg--UGGCCGU- -5'
27960 5' -63.3 NC_005886.2 + 41359 0.66 0.285601
Target:  5'- aCUGCCGuuUCGGGCGUc-GCGCCGGUg -3'
miRNA:   3'- cGGCGGU--GGCUCGCGcuCGUGGCCGu -5'
27960 5' -63.3 NC_005886.2 + 36249 0.66 0.278772
Target:  5'- gGCgGCgGCaCGGGCgGCG-GCGgCGGCAc -3'
miRNA:   3'- -CGgCGgUG-GCUCG-CGCuCGUgGCCGU- -5'
27960 5' -63.3 NC_005886.2 + 22807 0.67 0.259066
Target:  5'- -gCGUUAUgcAGCGCgguGAGCACCGGCAc -3'
miRNA:   3'- cgGCGGUGgcUCGCG---CUCGUGGCCGU- -5'
27960 5' -63.3 NC_005886.2 + 38888 0.67 0.252755
Target:  5'- cGgCGaCCGCUGcGCuGCGGGCACUGcGCAa -3'
miRNA:   3'- -CgGC-GGUGGCuCG-CGCUCGUGGC-CGU- -5'
27960 5' -63.3 NC_005886.2 + 13367 0.67 0.252755
Target:  5'- aGCCGUCACgGcuugcAGCguuGCGAGCG-CGGCGg -3'
miRNA:   3'- -CGGCGGUGgC-----UCG---CGCUCGUgGCCGU- -5'
27960 5' -63.3 NC_005886.2 + 42055 0.67 0.250886
Target:  5'- aCCGCCuacgauGCCGAGCgGCGcgaacacuucguucAGCgugucgGCCGGCAc -3'
miRNA:   3'- cGGCGG------UGGCUCG-CGC--------------UCG------UGGCCGU- -5'
27960 5' -63.3 NC_005886.2 + 4152 0.68 0.228768
Target:  5'- aGCCGgCACgUGGGCGCGuGCGucacugUCGGCu -3'
miRNA:   3'- -CGGCgGUG-GCUCGCGCuCGU------GGCCGu -5'
27960 5' -63.3 NC_005886.2 + 19181 0.68 0.228768
Target:  5'- gGCCGCUucgaugauGCUGAGacauuCGCGAuGCAgCGGCGa -3'
miRNA:   3'- -CGGCGG--------UGGCUC-----GCGCU-CGUgGCCGU- -5'
27960 5' -63.3 NC_005886.2 + 38832 0.68 0.228768
Target:  5'- aGCgGUCGCCGAGCG-GAcGUAuCCGGUc -3'
miRNA:   3'- -CGgCGGUGGCUCGCgCU-CGU-GGCCGu -5'
27960 5' -63.3 NC_005886.2 + 36254 0.68 0.217513
Target:  5'- uGCCGCCGCCGAuGcCGCccGUGCCGccGCGu -3'
miRNA:   3'- -CGGCGGUGGCU-C-GCGcuCGUGGC--CGU- -5'
27960 5' -63.3 NC_005886.2 + 16487 0.68 0.212065
Target:  5'- -gCGCCACCGAGUaGcCGAGUucagUCGGCGu -3'
miRNA:   3'- cgGCGGUGGCUCG-C-GCUCGu---GGCCGU- -5'
27960 5' -63.3 NC_005886.2 + 27865 0.68 0.210453
Target:  5'- uGCCGCCACaCGAcguagacaaauagcGCauaugcggcaGCGAGCGCC-GCAa -3'
miRNA:   3'- -CGGCGGUG-GCU--------------CG----------CGCUCGUGGcCGU- -5'
27960 5' -63.3 NC_005886.2 + 44605 0.68 0.206734
Target:  5'- aGCCGUgGCCGAGCGauGGCaaGCCGaGUu -3'
miRNA:   3'- -CGGCGgUGGCUCGCgcUCG--UGGC-CGu -5'
27960 5' -63.3 NC_005886.2 + 16670 0.69 0.191435
Target:  5'- aGCCGCCcgcACCGuucGGCacuGCGAcguaCGCCGGCAg -3'
miRNA:   3'- -CGGCGG---UGGC---UCG---CGCUc---GUGGCCGU- -5'
27960 5' -63.3 NC_005886.2 + 24419 0.69 0.181324
Target:  5'- aGCCGgCAacaaaacCCGuguugugcAGCGCGAGCgcGCCGGCc -3'
miRNA:   3'- -CGGCgGU-------GGC--------UCGCGCUCG--UGGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.