miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27964 3' -54 NC_005886.2 + 23869 0.66 0.730923
Target:  5'- ---uUUCACAUccgCAUCGAUCGCgGCAu -3'
miRNA:   3'- guacAAGUGUG---GUGGCUAGCGgCGUu -5'
27964 3' -54 NC_005886.2 + 21842 0.66 0.719963
Target:  5'- gCGUGUUCACagauGCCGCgCGAUgCGaugCGCAAg -3'
miRNA:   3'- -GUACAAGUG----UGGUG-GCUA-GCg--GCGUU- -5'
27964 3' -54 NC_005886.2 + 21210 0.66 0.719963
Target:  5'- -uUGUUCGCGagCACCug-CGCCGCGu -3'
miRNA:   3'- guACAAGUGUg-GUGGcuaGCGGCGUu -5'
27964 3' -54 NC_005886.2 + 28895 0.66 0.70891
Target:  5'- ------gACAUCAUCGAUcCGCCGCAGc -3'
miRNA:   3'- guacaagUGUGGUGGCUA-GCGGCGUU- -5'
27964 3' -54 NC_005886.2 + 16478 0.66 0.686575
Target:  5'- gCAUGUacuGCGCCACCGAguaGCCGa-- -3'
miRNA:   3'- -GUACAag-UGUGGUGGCUag-CGGCguu -5'
27964 3' -54 NC_005886.2 + 8220 0.66 0.686575
Target:  5'- uCGUGUUCACguacgguucGCCGCCGGaacagguaacgaUCGauaCGCAAg -3'
miRNA:   3'- -GUACAAGUG---------UGGUGGCU------------AGCg--GCGUU- -5'
27964 3' -54 NC_005886.2 + 46810 0.67 0.664018
Target:  5'- gCGUGUUC-CACCAgCc--CGCCGCAu -3'
miRNA:   3'- -GUACAAGuGUGGUgGcuaGCGGCGUu -5'
27964 3' -54 NC_005886.2 + 45886 0.67 0.664018
Target:  5'- -cUGUUCACGCUuuGCauguaGAUCGCgGCGu -3'
miRNA:   3'- guACAAGUGUGG--UGg----CUAGCGgCGUu -5'
27964 3' -54 NC_005886.2 + 5440 0.67 0.641333
Target:  5'- --aGUUCGCGCCAgCCGAcuuauUCGCaaGCAGg -3'
miRNA:   3'- guaCAAGUGUGGU-GGCU-----AGCGg-CGUU- -5'
27964 3' -54 NC_005886.2 + 22737 0.67 0.618613
Target:  5'- cUAUGaaaUUCAuCAUCGCCGcagcauUCGCCGCAAu -3'
miRNA:   3'- -GUAC---AAGU-GUGGUGGCu-----AGCGGCGUU- -5'
27964 3' -54 NC_005886.2 + 18177 0.68 0.573403
Target:  5'- -cUGUUCA-GCCAUCGucgCGCCGCGc -3'
miRNA:   3'- guACAAGUgUGGUGGCua-GCGGCGUu -5'
27964 3' -54 NC_005886.2 + 41978 0.68 0.562206
Target:  5'- aGUGUUCGCGCCGCuCGGcaUCGUagGCGGu -3'
miRNA:   3'- gUACAAGUGUGGUG-GCU--AGCGg-CGUU- -5'
27964 3' -54 NC_005886.2 + 6659 0.69 0.529006
Target:  5'- gCGUGgauugcgUCACGCCugCGAUaaCCGCAu -3'
miRNA:   3'- -GUACa------AGUGUGGugGCUAgcGGCGUu -5'
27964 3' -54 NC_005886.2 + 32514 0.7 0.454758
Target:  5'- --aGUUCgaauGCAUCACCGGcCGCUGCAAa -3'
miRNA:   3'- guaCAAG----UGUGGUGGCUaGCGGCGUU- -5'
27964 3' -54 NC_005886.2 + 12824 1.06 0.001611
Target:  5'- uCAUGUUCACACCACCGAUCGCCGCAAg -3'
miRNA:   3'- -GUACAAGUGUGGUGGCUAGCGGCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.