miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27965 3' -54.3 NC_005886.2 + 44896 0.66 0.755714
Target:  5'- cGAUcguuCCuUGACAGUCGUUcucacaauaCGUCGCCg -3'
miRNA:   3'- -CUAu---GGcACUGUCAGCAAc--------GCGGCGG- -5'
27965 3' -54.3 NC_005886.2 + 37288 0.66 0.755714
Target:  5'- cGUGCCGacGACgaAGUa-UUGCGCCGCg -3'
miRNA:   3'- cUAUGGCa-CUG--UCAgcAACGCGGCGg -5'
27965 3' -54.3 NC_005886.2 + 12771 0.66 0.723875
Target:  5'- aAUGCCGUcuuGCAuGUCGUgauacucaGCCGCCa -3'
miRNA:   3'- cUAUGGCAc--UGU-CAGCAacg-----CGGCGG- -5'
27965 3' -54.3 NC_005886.2 + 38583 0.66 0.723875
Target:  5'- gGAUACCGUGACG-----UGUGCC-CCa -3'
miRNA:   3'- -CUAUGGCACUGUcagcaACGCGGcGG- -5'
27965 3' -54.3 NC_005886.2 + 14403 0.66 0.713059
Target:  5'- --gACCGgucaaGACAGUUGggGCaCCGCa -3'
miRNA:   3'- cuaUGGCa----CUGUCAGCaaCGcGGCGg -5'
27965 3' -54.3 NC_005886.2 + 21323 0.67 0.70216
Target:  5'- -uUGCUGUGGUAG-CGguaCGCCGCCg -3'
miRNA:   3'- cuAUGGCACUGUCaGCaacGCGGCGG- -5'
27965 3' -54.3 NC_005886.2 + 18171 0.67 0.669092
Target:  5'- cGAUGCC-UGuuCAGccaUCGUcGCGCCGCg -3'
miRNA:   3'- -CUAUGGcACu-GUC---AGCAaCGCGGCGg -5'
27965 3' -54.3 NC_005886.2 + 15477 0.68 0.635702
Target:  5'- aGGUGUCGau-CAGcCGcUUGCGCCGCCg -3'
miRNA:   3'- -CUAUGGCacuGUCaGC-AACGCGGCGG- -5'
27965 3' -54.3 NC_005886.2 + 16953 0.68 0.635702
Target:  5'- cGUACCGUuguucgcuucgaGGcCGGUUugcaaGUUGCGCCGCUc -3'
miRNA:   3'- cUAUGGCA------------CU-GUCAG-----CAACGCGGCGG- -5'
27965 3' -54.3 NC_005886.2 + 44103 0.69 0.547215
Target:  5'- uGAUGCCGacccccGUCGcUGCGCCGCa -3'
miRNA:   3'- -CUAUGGCacugu-CAGCaACGCGGCGg -5'
27965 3' -54.3 NC_005886.2 + 20383 0.7 0.483446
Target:  5'- ---cCCGaUGACAG-CGUgcaggaUGCGUCGCCg -3'
miRNA:   3'- cuauGGC-ACUGUCaGCA------ACGCGGCGG- -5'
27965 3' -54.3 NC_005886.2 + 31175 0.74 0.318043
Target:  5'- ---uUCGUGGCAGUCGUacGCGaCGCCg -3'
miRNA:   3'- cuauGGCACUGUCAGCAa-CGCgGCGG- -5'
27965 3' -54.3 NC_005886.2 + 13319 1.13 0.000583
Target:  5'- cGAUACCGUGACAGUCGUUGCGCCGCCg -3'
miRNA:   3'- -CUAUGGCACUGUCAGCAACGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.