miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27967 3' -52.8 NC_005886.2 + 16269 0.66 0.853047
Target:  5'- cCGGCGCGUAaccCGgcAGGCGGUacaauacaaGGGCGCa -3'
miRNA:   3'- cGCUGCGCAU---GC--UCCGCUA---------CUUGUGc -5'
27967 3' -52.8 NC_005886.2 + 32335 0.66 0.853047
Target:  5'- cGCGAUGCGcACcGGG-GGUGAGCgguuGCGa -3'
miRNA:   3'- -CGCUGCGCaUGcUCCgCUACUUG----UGC- -5'
27967 3' -52.8 NC_005886.2 + 46079 0.66 0.853047
Target:  5'- aGCaACaGCGUGCGAugGGCGuUGAAC-CGu -3'
miRNA:   3'- -CGcUG-CGCAUGCU--CCGCuACUUGuGC- -5'
27967 3' -52.8 NC_005886.2 + 38956 0.66 0.844394
Target:  5'- aGCGAUG-GcGCGA-GCGAUGAACGuCGc -3'
miRNA:   3'- -CGCUGCgCaUGCUcCGCUACUUGU-GC- -5'
27967 3' -52.8 NC_005886.2 + 42444 0.66 0.835512
Target:  5'- aUGACGCuGUAUGuGGaCGAUGcgaAAUACGg -3'
miRNA:   3'- cGCUGCG-CAUGCuCC-GCUAC---UUGUGC- -5'
27967 3' -52.8 NC_005886.2 + 32185 0.66 0.826411
Target:  5'- -gGuACGCGUACGGcucGCGcaGUGGGCGCGu -3'
miRNA:   3'- cgC-UGCGCAUGCUc--CGC--UACUUGUGC- -5'
27967 3' -52.8 NC_005886.2 + 32715 0.67 0.788017
Target:  5'- uGCGuGCGCGaACGAGaGCc--GAACACGu -3'
miRNA:   3'- -CGC-UGCGCaUGCUC-CGcuaCUUGUGC- -5'
27967 3' -52.8 NC_005886.2 + 3422 0.67 0.767778
Target:  5'- cCGGCaaCGUAuuUGAGGCGAUGGACuuCGa -3'
miRNA:   3'- cGCUGc-GCAU--GCUCCGCUACUUGu-GC- -5'
27967 3' -52.8 NC_005886.2 + 26567 0.68 0.704006
Target:  5'- cGCGACGCGcugaaacuCGAauuGGCGGUGAuguuCGCc -3'
miRNA:   3'- -CGCUGCGCau------GCU---CCGCUACUu---GUGc -5'
27967 3' -52.8 NC_005886.2 + 34543 0.69 0.659893
Target:  5'- cGCuGCGCGUGCGGGGUGGauuUGAuGC-CGu -3'
miRNA:   3'- -CGcUGCGCAUGCUCCGCU---ACU-UGuGC- -5'
27967 3' -52.8 NC_005886.2 + 22797 0.7 0.615351
Target:  5'- gGCGAgaauCGCGuUAUGcAGcGCGGUGAGCACc -3'
miRNA:   3'- -CGCU----GCGC-AUGC-UC-CGCUACUUGUGc -5'
27967 3' -52.8 NC_005886.2 + 18247 0.7 0.615351
Target:  5'- cGCGGCGCG-ACGAuGGC--UGAACAgGc -3'
miRNA:   3'- -CGCUGCGCaUGCU-CCGcuACUUGUgC- -5'
27967 3' -52.8 NC_005886.2 + 1519 0.71 0.571043
Target:  5'- uCGugGCGUGCGuGGCGGgcuugUGGuUACGa -3'
miRNA:   3'- cGCugCGCAUGCuCCGCU-----ACUuGUGC- -5'
27967 3' -52.8 NC_005886.2 + 38288 0.73 0.434981
Target:  5'- cCGACGUGcGCGGGcGUGAUGAgaACGCGc -3'
miRNA:   3'- cGCUGCGCaUGCUC-CGCUACU--UGUGC- -5'
27967 3' -52.8 NC_005886.2 + 42741 0.74 0.406254
Target:  5'- uGCGauGCGCGUGCGAacuGCGAUGcgUACGa -3'
miRNA:   3'- -CGC--UGCGCAUGCUc--CGCUACuuGUGC- -5'
27967 3' -52.8 NC_005886.2 + 23698 0.74 0.378749
Target:  5'- gGCGuAgGCGUGCGuGGCGAUGcugaggcaaucAACGCGc -3'
miRNA:   3'- -CGC-UgCGCAUGCuCCGCUAC-----------UUGUGC- -5'
27967 3' -52.8 NC_005886.2 + 41592 0.75 0.34407
Target:  5'- gGCGAucauCGCGgcCGGGGCGAUGAcgaugcugACGCa -3'
miRNA:   3'- -CGCU----GCGCauGCUCCGCUACU--------UGUGc -5'
27967 3' -52.8 NC_005886.2 + 14549 1.1 0.001506
Target:  5'- gGCGACGCGUACGAGGCGAUGAACACGc -3'
miRNA:   3'- -CGCUGCGCAUGCUCCGCUACUUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.