miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27968 5' -53.5 NC_005886.2 + 20436 0.66 0.76763
Target:  5'- cUCGCUaACGUGCAGCGGcgcacccuugacuaGCGGGAUu -3'
miRNA:   3'- uAGUGG-UGCACGUUGCUag------------CGCUCUG- -5'
27968 5' -53.5 NC_005886.2 + 31507 0.66 0.756038
Target:  5'- -aCACCACGcGCuACGAUCGUGucAUc -3'
miRNA:   3'- uaGUGGUGCaCGuUGCUAGCGCucUG- -5'
27968 5' -53.5 NC_005886.2 + 36518 0.66 0.745359
Target:  5'- -gCACgACGUugcccaguuuGCAGCaGAUCGCG-GACa -3'
miRNA:   3'- uaGUGgUGCA----------CGUUG-CUAGCGCuCUG- -5'
27968 5' -53.5 NC_005886.2 + 40280 0.66 0.734557
Target:  5'- uUCACCACGUcacCAACGAUCGauuuCGAuuucuuGACg -3'
miRNA:   3'- uAGUGGUGCAc--GUUGCUAGC----GCU------CUG- -5'
27968 5' -53.5 NC_005886.2 + 26626 0.66 0.734557
Target:  5'- uUCAgCGCGUcGCGACGAUUcacgaGCGcGGCa -3'
miRNA:   3'- uAGUgGUGCA-CGUUGCUAG-----CGCuCUG- -5'
27968 5' -53.5 NC_005886.2 + 8502 0.66 0.734557
Target:  5'- uAUCGCUugGcGC-ACGAUCGaCGAuuGACa -3'
miRNA:   3'- -UAGUGGugCaCGuUGCUAGC-GCU--CUG- -5'
27968 5' -53.5 NC_005886.2 + 7547 0.67 0.712639
Target:  5'- cUCACCGgGUGCAAUcAUCGgugGGGGCu -3'
miRNA:   3'- uAGUGGUgCACGUUGcUAGCg--CUCUG- -5'
27968 5' -53.5 NC_005886.2 + 10913 0.67 0.690384
Target:  5'- -gCACCAaGUGCAACGAUCGaugcaacGGCu -3'
miRNA:   3'- uaGUGGUgCACGUUGCUAGCgcu----CUG- -5'
27968 5' -53.5 NC_005886.2 + 25020 0.68 0.645255
Target:  5'- aAUCACCACGUGCcauGCGcagaUGCGGcccuGACg -3'
miRNA:   3'- -UAGUGGUGCACGu--UGCua--GCGCU----CUG- -5'
27968 5' -53.5 NC_005886.2 + 13370 0.69 0.566179
Target:  5'- cGUCACgGCuUGCAGCG-UUGCGAGcGCg -3'
miRNA:   3'- -UAGUGgUGcACGUUGCuAGCGCUC-UG- -5'
27968 5' -53.5 NC_005886.2 + 46994 0.7 0.532952
Target:  5'- aAUCuugauCUugGUGguGCGAUCGCuGAGAa -3'
miRNA:   3'- -UAGu----GGugCACguUGCUAGCG-CUCUg -5'
27968 5' -53.5 NC_005886.2 + 35518 0.7 0.532952
Target:  5'- -gCGCCGgGUGCAACGggCGCGcAGuauCg -3'
miRNA:   3'- uaGUGGUgCACGUUGCuaGCGC-UCu--G- -5'
27968 5' -53.5 NC_005886.2 + 39440 0.72 0.408933
Target:  5'- -gCGCUugGUGCAACGGaagcCGCGAGuuGCg -3'
miRNA:   3'- uaGUGGugCACGUUGCUa---GCGCUC--UG- -5'
27968 5' -53.5 NC_005886.2 + 35629 0.72 0.408933
Target:  5'- uUCGCCGCGUGCGcuauGCGG-CGCGGcGAa -3'
miRNA:   3'- uAGUGGUGCACGU----UGCUaGCGCU-CUg -5'
27968 5' -53.5 NC_005886.2 + 33492 0.74 0.289261
Target:  5'- cGUCGCCACGUugacGCAGCGAaguuaGCGuGACg -3'
miRNA:   3'- -UAGUGGUGCA----CGUUGCUag---CGCuCUG- -5'
27968 5' -53.5 NC_005886.2 + 24771 0.76 0.234168
Target:  5'- cUCGCCGCGuUGCGcGCGGaCGCGGGGCu -3'
miRNA:   3'- uAGUGGUGC-ACGU-UGCUaGCGCUCUG- -5'
27968 5' -53.5 NC_005886.2 + 14921 1.07 0.001644
Target:  5'- cAUCACCACGUGCAACGAUCGCGAGACc -3'
miRNA:   3'- -UAGUGGUGCACGUUGCUAGCGCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.