miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27969 5' -53.2 NC_005886.2 + 16328 0.66 0.772775
Target:  5'- cUACACGAacgcAACgGCCGGcGCGAuguugaagcgcccguUCGCAa -3'
miRNA:   3'- -AUGUGCU----UUGgCGGUC-UGCU---------------AGCGUa -5'
27969 5' -53.2 NC_005886.2 + 4472 0.66 0.768575
Target:  5'- aGCAUGAcGCCgGCCGGACGcg-GCAg -3'
miRNA:   3'- aUGUGCUuUGG-CGGUCUGCuagCGUa -5'
27969 5' -53.2 NC_005886.2 + 38373 0.66 0.751542
Target:  5'- -uCGCGAGACCGUagCGGAUGAacccuguuucagucuUCGCGg -3'
miRNA:   3'- auGUGCUUUGGCG--GUCUGCU---------------AGCGUa -5'
27969 5' -53.2 NC_005886.2 + 46007 0.66 0.736361
Target:  5'- aUACGCGAuAGCCGCaucGGCGcagAUCGCGc -3'
miRNA:   3'- -AUGUGCU-UUGGCGgu-CUGC---UAGCGUa -5'
27969 5' -53.2 NC_005886.2 + 32829 0.66 0.736361
Target:  5'- -uCACGAuACaGCgCAGACGAaCGCAUg -3'
miRNA:   3'- auGUGCUuUGgCG-GUCUGCUaGCGUA- -5'
27969 5' -53.2 NC_005886.2 + 43189 0.67 0.703129
Target:  5'- cGCGCGcAACCuuaagcccuGCCgguGGACGAUCGCu- -3'
miRNA:   3'- aUGUGCuUUGG---------CGG---UCUGCUAGCGua -5'
27969 5' -53.2 NC_005886.2 + 23761 0.67 0.669223
Target:  5'- cGCACGAuagggcuuguuAUCGCgCAGaACGGUCGCGa -3'
miRNA:   3'- aUGUGCUu----------UGGCG-GUC-UGCUAGCGUa -5'
27969 5' -53.2 NC_005886.2 + 18356 0.68 0.657829
Target:  5'- gGCgAUGGAugCGgCAGACGuUCGCAa -3'
miRNA:   3'- aUG-UGCUUugGCgGUCUGCuAGCGUa -5'
27969 5' -53.2 NC_005886.2 + 27855 0.68 0.634977
Target:  5'- aACACGGGcuuGCCGCCAcACGA-CGUAg -3'
miRNA:   3'- aUGUGCUU---UGGCGGUcUGCUaGCGUa -5'
27969 5' -53.2 NC_005886.2 + 31090 0.68 0.634977
Target:  5'- cGCAUGAGACCGaUCGG-CG-UCGCGUa -3'
miRNA:   3'- aUGUGCUUUGGC-GGUCuGCuAGCGUA- -5'
27969 5' -53.2 NC_005886.2 + 41329 0.69 0.555452
Target:  5'- gAUACGGAaggucuGCCGUgGGACGAaCGCAUc -3'
miRNA:   3'- aUGUGCUU------UGGCGgUCUGCUaGCGUA- -5'
27969 5' -53.2 NC_005886.2 + 1195 0.7 0.511248
Target:  5'- cUGCACGAaaaagaaggcGACCGCC---UGAUCGCAUa -3'
miRNA:   3'- -AUGUGCU----------UUGGCGGucuGCUAGCGUA- -5'
27969 5' -53.2 NC_005886.2 + 22274 0.7 0.489693
Target:  5'- gGCGCGAGugUcaCGGGCGGUCGCAUu -3'
miRNA:   3'- aUGUGCUUugGcgGUCUGCUAGCGUA- -5'
27969 5' -53.2 NC_005886.2 + 26864 0.72 0.407248
Target:  5'- aGCACGAucaacgagguucuGACCGUguG-CGAUCGCGUg -3'
miRNA:   3'- aUGUGCU-------------UUGGCGguCuGCUAGCGUA- -5'
27969 5' -53.2 NC_005886.2 + 2385 0.73 0.352953
Target:  5'- gACACGcuGCCGUCAGGCuguGUCGCGUc -3'
miRNA:   3'- aUGUGCuuUGGCGGUCUGc--UAGCGUA- -5'
27969 5' -53.2 NC_005886.2 + 46749 0.79 0.14869
Target:  5'- gGCugGugGAACaCGCCGGACGGUCGCGa -3'
miRNA:   3'- aUGugC--UUUG-GCGGUCUGCUAGCGUa -5'
27969 5' -53.2 NC_005886.2 + 15307 1.04 0.002654
Target:  5'- aUACACGAAACCGCCAGACGAUCGCAUc -3'
miRNA:   3'- -AUGUGCUUUGGCGGUCUGCUAGCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.