miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2797 3' -60 NC_001491.2 + 141198 0.66 0.680735
Target:  5'- gAGGAGgAGGAAGaagacGAGGccAGCGGGGAg -3'
miRNA:   3'- -UCCUCgUCCUUCcc---CUCC--UCGUCCUU- -5'
2797 3' -60 NC_001491.2 + 150190 0.66 0.670622
Target:  5'- gGGGGGCGuGGucuAAGGGGGGGGGUcaaAGuGAc -3'
miRNA:   3'- -UCCUCGU-CC---UUCCCCUCCUCG---UC-CUu -5'
2797 3' -60 NC_001491.2 + 121528 0.66 0.669609
Target:  5'- uGGAGCgugGGGAcgggucccccgccGGGGGcgaGGGGGuCAGGGAc -3'
miRNA:   3'- uCCUCG---UCCU-------------UCCCC---UCCUC-GUCCUU- -5'
2797 3' -60 NC_001491.2 + 89546 0.67 0.650312
Target:  5'- uGGGGCGGGAca-GGuuGAGCGGGGAg -3'
miRNA:   3'- uCCUCGUCCUuccCCucCUCGUCCUU- -5'
2797 3' -60 NC_001491.2 + 147150 0.67 0.640131
Target:  5'- uGGGAGUGcuGGGGGGAcugGGAGUGGGAc -3'
miRNA:   3'- -UCCUCGUccUUCCCCU---CCUCGUCCUu -5'
2797 3' -60 NC_001491.2 + 145400 0.68 0.589288
Target:  5'- cGGAGCGGGugcgccGGGGGAagcggcgccGGAGCGGc-- -3'
miRNA:   3'- uCCUCGUCCu-----UCCCCU---------CCUCGUCcuu -5'
2797 3' -60 NC_001491.2 + 147907 0.68 0.579183
Target:  5'- cGGGGCGGGAGGccGGGAGuccgcccAGCAGGu- -3'
miRNA:   3'- uCCUCGUCCUUC--CCCUCc------UCGUCCuu -5'
2797 3' -60 NC_001491.2 + 58105 0.68 0.559093
Target:  5'- uGGAGCAGGGuccagaaccacuGGGGGuuuGGAGUgucgaugccGGGGGg -3'
miRNA:   3'- uCCUCGUCCU------------UCCCCu--CCUCG---------UCCUU- -5'
2797 3' -60 NC_001491.2 + 59936 0.69 0.509843
Target:  5'- cGGAGCAGGGAuGGGuGGGGUcacacagcuccGGGGGu -3'
miRNA:   3'- uCCUCGUCCUUcCCCuCCUCG-----------UCCUU- -5'
2797 3' -60 NC_001491.2 + 120283 0.69 0.490646
Target:  5'- cGGGGCAuGGggGGGGGuguGGAcgugGguGGAAg -3'
miRNA:   3'- uCCUCGU-CCuuCCCCU---CCU----CguCCUU- -5'
2797 3' -60 NC_001491.2 + 139300 0.7 0.471792
Target:  5'- -aGAGCGGu-AGGGGAGGccgAGCGGGGGa -3'
miRNA:   3'- ucCUCGUCcuUCCCCUCC---UCGUCCUU- -5'
2797 3' -60 NC_001491.2 + 143383 0.7 0.435231
Target:  5'- uGGGAGgGGGAGGGGGAa-AGguGGGc -3'
miRNA:   3'- -UCCUCgUCCUUCCCCUccUCguCCUu -5'
2797 3' -60 NC_001491.2 + 112426 0.72 0.367328
Target:  5'- aGGGGGCuAGGGcAGGGGGcuaGGGCAGGGGg -3'
miRNA:   3'- -UCCUCG-UCCU-UCCCCUc--CUCGUCCUU- -5'
2797 3' -60 NC_001491.2 + 112465 0.72 0.367328
Target:  5'- aGGGGGCuAGGGcAGGGGGcuaGGGCAGGGGg -3'
miRNA:   3'- -UCCUCG-UCCU-UCCCCUc--CUCGUCCUU- -5'
2797 3' -60 NC_001491.2 + 112504 0.72 0.367328
Target:  5'- aGGGGGCuAGGGcAGGGGGcuaGGGCAGGGGg -3'
miRNA:   3'- -UCCUCG-UCCU-UCCCCUc--CUCGUCCUU- -5'
2797 3' -60 NC_001491.2 + 44551 0.73 0.314173
Target:  5'- uGGGGCA-GAGGGGGAGcGGguGGAAg -3'
miRNA:   3'- uCCUCGUcCUUCCCCUCcUCguCCUU- -5'
2797 3' -60 NC_001491.2 + 44488 0.73 0.314173
Target:  5'- uGGGGCA-GAGGGGGAGcGGguGGAAg -3'
miRNA:   3'- uCCUCGUcCUUCCCCUCcUCguCCUU- -5'
2797 3' -60 NC_001491.2 + 44426 0.73 0.314173
Target:  5'- uGGGGCA-GAGGGGGAGcGGguGGAAg -3'
miRNA:   3'- uCCUCGUcCUUCCCCUCcUCguCCUU- -5'
2797 3' -60 NC_001491.2 + 150132 0.73 0.314173
Target:  5'- aAGGGGCGuggccggaagcGGAAGGGGAGGAGUccGGu -3'
miRNA:   3'- -UCCUCGU-----------CCUUCCCCUCCUCGucCUu -5'
2797 3' -60 NC_001491.2 + 140245 0.73 0.307072
Target:  5'- -cGAGCGGGGAcGGGGAcgGGGGCGGGc- -3'
miRNA:   3'- ucCUCGUCCUU-CCCCU--CCUCGUCCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.