miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2797 3' -60 NC_001491.2 + 149941 1.06 0.001523
Target:  5'- gAGGAGCAGGAAGGGGAGGAGCAGGAAg -3'
miRNA:   3'- -UCCUCGUCCUUCCCCUCCUCGUCCUU- -5'
2797 3' -60 NC_001491.2 + 149911 1.06 0.001523
Target:  5'- gAGGAGCAGGAAGGGGAGGAGCAGGAAg -3'
miRNA:   3'- -UCCUCGUCCUUCCCCUCCUCGUCCUU- -5'
2797 3' -60 NC_001491.2 + 149881 1.06 0.001523
Target:  5'- gAGGAGCAGGAAGGGGAGGAGCAGGAAg -3'
miRNA:   3'- -UCCUCGUCCUUCCCCUCCUCGUCCUU- -5'
2797 3' -60 NC_001491.2 + 149851 1.06 0.001523
Target:  5'- gAGGAGCAGGAAGGGGAGGAGCAGGAAg -3'
miRNA:   3'- -UCCUCGUCCUUCCCCUCCUCGUCCUU- -5'
2797 3' -60 NC_001491.2 + 149971 1.06 0.001523
Target:  5'- gAGGAGCAGGAAGGGGAGGAGCAGGAAg -3'
miRNA:   3'- -UCCUCGUCCUUCCCCUCCUCGUCCUU- -5'
2797 3' -60 NC_001491.2 + 150001 1.06 0.001523
Target:  5'- gAGGAGCAGGAAGGGGAGGAGCAGGAAg -3'
miRNA:   3'- -UCCUCGUCCUUCCCCUCCUCGUCCUU- -5'
2797 3' -60 NC_001491.2 + 150031 1.06 0.001523
Target:  5'- gAGGAGCAGGAAGGGGAGGAGCAGGAAg -3'
miRNA:   3'- -UCCUCGUCCUUCCCCUCCUCGUCCUU- -5'
2797 3' -60 NC_001491.2 + 150061 1.06 0.001523
Target:  5'- gAGGAGCAGGAAGGGGAGGAGCAGGAAg -3'
miRNA:   3'- -UCCUCGUCCUUCCCCUCCUCGUCCUU- -5'
2797 3' -60 NC_001491.2 + 44353 0.83 0.069092
Target:  5'- gGGGAGCGGGuggaaGAGuGGGAGGAGCAGGu- -3'
miRNA:   3'- -UCCUCGUCC-----UUC-CCCUCCUCGUCCuu -5'
2797 3' -60 NC_001491.2 + 139249 0.77 0.155434
Target:  5'- gGGGAGCGGu-AGGGGAGGccgAGCGGGGGa -3'
miRNA:   3'- -UCCUCGUCcuUCCCCUCC---UCGUCCUU- -5'
2797 3' -60 NC_001491.2 + 140469 0.74 0.254674
Target:  5'- aAGG-GUGGGguGGGGGGGAGgAGGAAc -3'
miRNA:   3'- -UCCuCGUCCuuCCCCUCCUCgUCCUU- -5'
2797 3' -60 NC_001491.2 + 139095 0.73 0.29324
Target:  5'- -cGAGCGGGGgagagcgguAGGGGAGGccgAGCGGGGGa -3'
miRNA:   3'- ucCUCGUCCU---------UCCCCUCC---UCGUCCUU- -5'
2797 3' -60 NC_001491.2 + 139041 0.73 0.29324
Target:  5'- -cGAGCGGGGgagagcgguAGGGGAGGccgAGCGGGGGa -3'
miRNA:   3'- ucCUCGUCCU---------UCCCCUCC---UCGUCCUU- -5'
2797 3' -60 NC_001491.2 + 139149 0.73 0.29324
Target:  5'- -cGAGCGGGGgagagcgguAGGGGAGGccgAGCGGGGGa -3'
miRNA:   3'- ucCUCGUCCU---------UCCCCUCC---UCGUCCUU- -5'
2797 3' -60 NC_001491.2 + 139203 0.73 0.29324
Target:  5'- -cGAGCGGGGgagagcgguAGGGGAGGccgAGCGGGGGa -3'
miRNA:   3'- ucCUCGUCCU---------UCCCCUCC---UCGUCCUU- -5'
2797 3' -60 NC_001491.2 + 139337 0.73 0.29324
Target:  5'- -cGAGCGGGGgagagcgguAGGGGAGGccgAGCGGGGGa -3'
miRNA:   3'- ucCUCGUCCU---------UCCCCUCC---UCGUCCUU- -5'
2797 3' -60 NC_001491.2 + 140245 0.73 0.307072
Target:  5'- -cGAGCGGGGAcGGGGAcgGGGGCGGGc- -3'
miRNA:   3'- ucCUCGUCCUU-CCCCU--CCUCGUCCuu -5'
2797 3' -60 NC_001491.2 + 150132 0.73 0.314173
Target:  5'- aAGGGGCGuggccggaagcGGAAGGGGAGGAGUccGGu -3'
miRNA:   3'- -UCCUCGU-----------CCUUCCCCUCCUCGucCUu -5'
2797 3' -60 NC_001491.2 + 44488 0.73 0.314173
Target:  5'- uGGGGCA-GAGGGGGAGcGGguGGAAg -3'
miRNA:   3'- uCCUCGUcCUUCCCCUCcUCguCCUU- -5'
2797 3' -60 NC_001491.2 + 44551 0.73 0.314173
Target:  5'- uGGGGCA-GAGGGGGAGcGGguGGAAg -3'
miRNA:   3'- uCCUCGUcCUUCCCCUCcUCguCCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.