miRNA display CGI


Results 1 - 20 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2797 5' -57.8 NC_001491.2 + 81444 0.66 0.860014
Target:  5'- aCGUCCAcugcgUCGGCCUcUCCAUCGcacgcguacacggGCCCGg -3'
miRNA:   3'- -GCGGGU-----AGUUGGGcGGGUAGU-------------UGGGC- -5'
2797 5' -57.8 NC_001491.2 + 50581 0.66 0.853151
Target:  5'- gCGCCCA-CAACCCaGCaCAUaCAcGCCCa -3'
miRNA:   3'- -GCGGGUaGUUGGG-CGgGUA-GU-UGGGc -5'
2797 5' -57.8 NC_001491.2 + 137759 0.66 0.84534
Target:  5'- aCGUCaCGUCu-CCCGCCCggCGggcggcgggcGCCCGc -3'
miRNA:   3'- -GCGG-GUAGuuGGGCGGGuaGU----------UGGGC- -5'
2797 5' -57.8 NC_001491.2 + 144297 0.66 0.84534
Target:  5'- cCGCCgAggCAGaagCCGCCCggGUCuGCCCGg -3'
miRNA:   3'- -GCGGgUa-GUUg--GGCGGG--UAGuUGGGC- -5'
2797 5' -57.8 NC_001491.2 + 117393 0.66 0.837343
Target:  5'- cCGCUUcUCAcCCCGUCCGggGACCCc -3'
miRNA:   3'- -GCGGGuAGUuGGGCGGGUagUUGGGc -5'
2797 5' -57.8 NC_001491.2 + 110932 0.66 0.837343
Target:  5'- aCGCCUgaGUCugaagAACCCcCCCGggacCAACCCGu -3'
miRNA:   3'- -GCGGG--UAG-----UUGGGcGGGUa---GUUGGGC- -5'
2797 5' -57.8 NC_001491.2 + 31307 0.66 0.836533
Target:  5'- aCGCCaacgagcUAUCAAccacgcugccucCCCGCCCGUCucgcuCCCa -3'
miRNA:   3'- -GCGG-------GUAGUU------------GGGCGGGUAGuu---GGGc -5'
2797 5' -57.8 NC_001491.2 + 116223 0.66 0.829164
Target:  5'- gGCCCcacCGACUCGguCCCAgCAGCCCu -3'
miRNA:   3'- gCGGGua-GUUGGGC--GGGUaGUUGGGc -5'
2797 5' -57.8 NC_001491.2 + 98193 0.66 0.820812
Target:  5'- gCGCUCAUaccuaGAgCCGgCCA-CAGCCCGu -3'
miRNA:   3'- -GCGGGUAg----UUgGGCgGGUaGUUGGGC- -5'
2797 5' -57.8 NC_001491.2 + 36931 0.67 0.812294
Target:  5'- gGCCacaGUCcaGGCCCGCCCuUCGacgagcACCCc -3'
miRNA:   3'- gCGGg--UAG--UUGGGCGGGuAGU------UGGGc -5'
2797 5' -57.8 NC_001491.2 + 125154 0.67 0.785821
Target:  5'- cCGCCgCAaugcCAACCCGCCCcaccucGUCuugGCCCc -3'
miRNA:   3'- -GCGG-GUa---GUUGGGCGGG------UAGu--UGGGc -5'
2797 5' -57.8 NC_001491.2 + 58454 0.68 0.74869
Target:  5'- uGCCCGUCcACgCGgCCGgguuaGACCCGa -3'
miRNA:   3'- gCGGGUAGuUGgGCgGGUag---UUGGGC- -5'
2797 5' -57.8 NC_001491.2 + 114446 0.68 0.733363
Target:  5'- uGCCCAUCAccgaggcuccccgccGCCgaGCCCcgCGggucgacugggaGCCCGg -3'
miRNA:   3'- gCGGGUAGU---------------UGGg-CGGGuaGU------------UGGGC- -5'
2797 5' -57.8 NC_001491.2 + 141753 0.69 0.709974
Target:  5'- gGCCCAgcggggGACgCCGUCCAcCAGCCCc -3'
miRNA:   3'- gCGGGUag----UUG-GGCGGGUaGUUGGGc -5'
2797 5' -57.8 NC_001491.2 + 35849 0.69 0.707022
Target:  5'- uCGCCCuuaagggucacaacGUCGGCCCGCagGUCGGCgCGc -3'
miRNA:   3'- -GCGGG--------------UAGUUGGGCGggUAGUUGgGC- -5'
2797 5' -57.8 NC_001491.2 + 125508 0.7 0.650147
Target:  5'- cCGCCgCcgCGACgCCGCCCcgCcccgggGACCCGc -3'
miRNA:   3'- -GCGG-GuaGUUG-GGCGGGuaG------UUGGGC- -5'
2797 5' -57.8 NC_001491.2 + 2520 0.71 0.579808
Target:  5'- -cCCCGUCGGCCUggcaggguccgGCCCGcgUCAGCCCc -3'
miRNA:   3'- gcGGGUAGUUGGG-----------CGGGU--AGUUGGGc -5'
2797 5' -57.8 NC_001491.2 + 118184 0.71 0.537325
Target:  5'- uCGCCC-UCGacagcgauaccgagACCUGCCCGggguccccgCAGCCCGa -3'
miRNA:   3'- -GCGGGuAGU--------------UGGGCGGGUa--------GUUGGGC- -5'
2797 5' -57.8 NC_001491.2 + 141854 0.72 0.501656
Target:  5'- aGCCCAgcuccggCGACCCcgGCCCAgccCAGCuCCGg -3'
miRNA:   3'- gCGGGUa------GUUGGG--CGGGUa--GUUG-GGC- -5'
2797 5' -57.8 NC_001491.2 + 145909 0.72 0.501656
Target:  5'- uCGuCCCA-CAGCCCGUCCcgCGAgucCCCGg -3'
miRNA:   3'- -GC-GGGUaGUUGGGCGGGuaGUU---GGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.