miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27975 3' -51.6 NC_005886.2 + 40672 0.66 0.868704
Target:  5'- aGCGAggguauccacGGAUGCaaucGACCacugcgcauguGGCGUAUAGGUc -3'
miRNA:   3'- aCGCU----------UCUACG----CUGG-----------CCGUAUGUUCG- -5'
27975 3' -51.6 NC_005886.2 + 31559 0.66 0.86536
Target:  5'- cGCGAAGAUGCGAguuuucuucaaCCucacugaucaguaGCAUGCGcguagAGCg -3'
miRNA:   3'- aCGCUUCUACGCU-----------GGc------------CGUAUGU-----UCG- -5'
27975 3' -51.6 NC_005886.2 + 7592 0.66 0.860266
Target:  5'- aGCGGcuuaccGCGAUCcuuGCAUACGAGCg -3'
miRNA:   3'- aCGCUucua--CGCUGGc--CGUAUGUUCG- -5'
27975 3' -51.6 NC_005886.2 + 35637 0.66 0.860266
Target:  5'- gUGCGcu-AUGCGGCgCGGCGaacuucuuUugAAGCg -3'
miRNA:   3'- -ACGCuucUACGCUG-GCCGU--------AugUUCG- -5'
27975 3' -51.6 NC_005886.2 + 14303 0.66 0.860266
Target:  5'- cGCGAugcuuGAUGCGGgcuuggCGGCAUAUgcuGCa -3'
miRNA:   3'- aCGCUu----CUACGCUg-----GCCGUAUGuu-CG- -5'
27975 3' -51.6 NC_005886.2 + 19486 0.66 0.856818
Target:  5'- cUGCGAcGuacacaacgccaGCGGCCGGaCGUucaACGAGCg -3'
miRNA:   3'- -ACGCUuCua----------CGCUGGCC-GUA---UGUUCG- -5'
27975 3' -51.6 NC_005886.2 + 36210 0.66 0.85157
Target:  5'- gGCGGcaucGGcgGCGGCacgGGCGgcACGGGCg -3'
miRNA:   3'- aCGCU----UCuaCGCUGg--CCGUa-UGUUCG- -5'
27975 3' -51.6 NC_005886.2 + 21018 0.66 0.85157
Target:  5'- gUGCcGAGcaucuuaGgGGCCGGCGUACGcGCg -3'
miRNA:   3'- -ACGcUUCua-----CgCUGGCCGUAUGUuCG- -5'
27975 3' -51.6 NC_005886.2 + 11770 0.66 0.85157
Target:  5'- aUGCGAucGAcGUGGCCGGgauguagucCGUACAcGCg -3'
miRNA:   3'- -ACGCUu-CUaCGCUGGCC---------GUAUGUuCG- -5'
27975 3' -51.6 NC_005886.2 + 13615 0.66 0.850687
Target:  5'- gUGCGGcGGAUGuCGGCgcguacuucgguaCGGCGUccgaagaauACAAGCg -3'
miRNA:   3'- -ACGCU-UCUAC-GCUG-------------GCCGUA---------UGUUCG- -5'
27975 3' -51.6 NC_005886.2 + 30645 0.66 0.848912
Target:  5'- uUGgGAauGGAUGCGACaacagggaaccccgUGGCAUaagaaACGAGUg -3'
miRNA:   3'- -ACgCU--UCUACGCUG--------------GCCGUA-----UGUUCG- -5'
27975 3' -51.6 NC_005886.2 + 44135 0.66 0.842625
Target:  5'- gUGcCGAcgcAGAaaGCGGCCGGC-UACAcGCu -3'
miRNA:   3'- -AC-GCU---UCUa-CGCUGGCCGuAUGUuCG- -5'
27975 3' -51.6 NC_005886.2 + 20613 0.66 0.842625
Target:  5'- cGCGAua--GCGGCgCGGCAUuCGAGg -3'
miRNA:   3'- aCGCUucuaCGCUG-GCCGUAuGUUCg -5'
27975 3' -51.6 NC_005886.2 + 41563 0.66 0.83344
Target:  5'- aGCGccGGAcguUGCGGCCGGU--GCGuucGGCg -3'
miRNA:   3'- aCGCu-UCU---ACGCUGGCCGuaUGU---UCG- -5'
27975 3' -51.6 NC_005886.2 + 36261 0.67 0.824025
Target:  5'- gGCGGcGGcgGCGGCacgGGCGgcACGGGCg -3'
miRNA:   3'- aCGCU-UCuaCGCUGg--CCGUa-UGUUCG- -5'
27975 3' -51.6 NC_005886.2 + 18210 0.67 0.823071
Target:  5'- cGCGAuuacgucGGAUGCGucuuGCaCGGguUGCAgaccGGCg -3'
miRNA:   3'- aCGCU-------UCUACGC----UG-GCCguAUGU----UCG- -5'
27975 3' -51.6 NC_005886.2 + 33388 0.67 0.814391
Target:  5'- uUGCGcGAGcgGCGAaaguugaccguUCGGCAUGCAuuuGUc -3'
miRNA:   3'- -ACGC-UUCuaCGCU-----------GGCCGUAUGUu--CG- -5'
27975 3' -51.6 NC_005886.2 + 10538 0.67 0.814391
Target:  5'- -uCGAAuGAaGCGGCuCGGCAUcgucacgcggcaACAAGCg -3'
miRNA:   3'- acGCUU-CUaCGCUG-GCCGUA------------UGUUCG- -5'
27975 3' -51.6 NC_005886.2 + 40254 0.67 0.80455
Target:  5'- uUGUGAAGcccugcgcGCGGCUGGCGUACcuucgauGGUg -3'
miRNA:   3'- -ACGCUUCua------CGCUGGCCGUAUGu------UCG- -5'
27975 3' -51.6 NC_005886.2 + 26989 0.67 0.80455
Target:  5'- gGCGGcacuacGCGACCGGCAaccuUGCGcGGCu -3'
miRNA:   3'- aCGCUucua--CGCUGGCCGU----AUGU-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.