Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27977 | 5' | -52.3 | NC_005886.2 | + | 662 | 0.68 | 0.656756 |
Target: 5'- aUACGCGccaaucgcAACC-AAGCCGGCcGCAAc- -3' miRNA: 3'- -AUGCGC--------UUGGcUUCGGCCGuUGUUuu -5' |
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27977 | 5' | -52.3 | NC_005886.2 | + | 2220 | 0.69 | 0.57586 |
Target: 5'- aGCGC-AACCac-GCCGGCAACAAc- -3' miRNA: 3'- aUGCGcUUGGcuuCGGCCGUUGUUuu -5' |
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27977 | 5' | -52.3 | NC_005886.2 | + | 3443 | 0.66 | 0.800219 |
Target: 5'- -gUGCagGAACCGGcacgauuGCCGGCAACGu-- -3' miRNA: 3'- auGCG--CUUGGCUu------CGGCCGUUGUuuu -5' |
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27977 | 5' | -52.3 | NC_005886.2 | + | 4703 | 0.66 | 0.779573 |
Target: 5'- aGCGUcaAGCCGAcGCCGGCuuguGACGAAc -3' miRNA: 3'- aUGCGc-UUGGCUuCGGCCG----UUGUUUu -5' |
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27977 | 5' | -52.3 | NC_005886.2 | + | 11613 | 0.76 | 0.247798 |
Target: 5'- cGCGUGcAACCGucGCCGGCAACu--- -3' miRNA: 3'- aUGCGC-UUGGCuuCGGCCGUUGuuuu -5' |
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27977 | 5' | -52.3 | NC_005886.2 | + | 11705 | 0.66 | 0.797169 |
Target: 5'- gACGCGuACCuacguuaucuccaaGuuGCCGGCGACGGu- -3' miRNA: 3'- aUGCGCuUGG--------------CuuCGGCCGUUGUUuu -5' |
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27977 | 5' | -52.3 | NC_005886.2 | + | 11731 | 0.75 | 0.29107 |
Target: 5'- -gUGCuGACCGguGCCGGCGACGAGGg -3' miRNA: 3'- auGCGcUUGGCuuCGGCCGUUGUUUU- -5' |
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27977 | 5' | -52.3 | NC_005886.2 | + | 15112 | 0.72 | 0.454744 |
Target: 5'- cGCGCGAucauucauccgACCGAcgauuGCCGcGCAGCAAGc -3' miRNA: 3'- aUGCGCU-----------UGGCUu----CGGC-CGUUGUUUu -5' |
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27977 | 5' | -52.3 | NC_005886.2 | + | 16957 | 0.67 | 0.747366 |
Target: 5'- gACGCGuACCguuguucgcuucGAGGCCGGUuuGCAAGu -3' miRNA: 3'- aUGCGCuUGG------------CUUCGGCCGu-UGUUUu -5' |
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27977 | 5' | -52.3 | NC_005886.2 | + | 17118 | 0.69 | 0.57586 |
Target: 5'- -cCGgGAAUCGAGaCCGGCGACAGc- -3' miRNA: 3'- auGCgCUUGGCUUcGGCCGUUGUUuu -5' |
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27977 | 5' | -52.3 | NC_005886.2 | + | 17377 | 0.66 | 0.800219 |
Target: 5'- -uCGuCGGGCCGA--UCGGCAGCGGAc -3' miRNA: 3'- auGC-GCUUGGCUucGGCCGUUGUUUu -5' |
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27977 | 5' | -52.3 | NC_005886.2 | + | 21826 | 0.67 | 0.736354 |
Target: 5'- cGCGCGAugCGAugcGCaagGGCuACAAGAu -3' miRNA: 3'- aUGCGCUugGCUu--CGg--CCGuUGUUUU- -5' |
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27977 | 5' | -52.3 | NC_005886.2 | + | 23599 | 0.73 | 0.375863 |
Target: 5'- gUGCGUGAGCCGGAcaagcaaguGCCGGgGGCAu-- -3' miRNA: 3'- -AUGCGCUUGGCUU---------CGGCCgUUGUuuu -5' |
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27977 | 5' | -52.3 | NC_005886.2 | + | 24406 | 1.04 | 0.002771 |
Target: 5'- uUACGCGAACCGAAGCCGGCAACAAAAc -3' miRNA: 3'- -AUGCGCUUGGCUUCGGCCGUUGUUUU- -5' |
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27977 | 5' | -52.3 | NC_005886.2 | + | 25012 | 0.69 | 0.622007 |
Target: 5'- aUGCGCGcuUCGAucaacGCCGGCAGgAAAAu -3' miRNA: 3'- -AUGCGCuuGGCUu----CGGCCGUUgUUUU- -5' |
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27977 | 5' | -52.3 | NC_005886.2 | + | 29884 | 0.72 | 0.451624 |
Target: 5'- aGCGCGAcucgcagcaaagggGCCGAagcgcaagGGCCGGCcGCAAc- -3' miRNA: 3'- aUGCGCU--------------UGGCU--------UCGGCCGuUGUUuu -5' |
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27977 | 5' | -52.3 | NC_005886.2 | + | 31036 | 0.68 | 0.679815 |
Target: 5'- gGCGUucGGCUGAAGaCGGCAGCGGAGg -3' miRNA: 3'- aUGCGc-UUGGCUUCgGCCGUUGUUUU- -5' |
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27977 | 5' | -52.3 | NC_005886.2 | + | 34647 | 0.69 | 0.622007 |
Target: 5'- cGCGCGGAaCGAucGCaCGGCAACAu-- -3' miRNA: 3'- aUGCGCUUgGCUu-CG-GCCGUUGUuuu -5' |
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27977 | 5' | -52.3 | NC_005886.2 | + | 35991 | 0.7 | 0.553055 |
Target: 5'- gGCGUGucauuGCCGAAGUCGGCGGu---- -3' miRNA: 3'- aUGCGCu----UGGCUUCGGCCGUUguuuu -5' |
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27977 | 5' | -52.3 | NC_005886.2 | + | 36694 | 0.66 | 0.76899 |
Target: 5'- cAUGCGGAuucuuuaguuCCGAcGCCGcGCGACAGu- -3' miRNA: 3'- aUGCGCUU----------GGCUuCGGC-CGUUGUUuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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